Protein Function Prediction

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Papers

Recently Added Most Hyped Most Active Needs Verification Most Verified

Showing 61–70 of 79 papers

Title	Date	Tasks	Status
AFDP: An Automated Function Description Prediction Approach to Improve Accuracy of Protein Function Predictions	Oct 15, 2019	Protein Function Prediction	CodeCode Available
Combining graph and sequence information to learn protein representations	Sep 25, 2019	Protein Function PredictionRepresentation Learning	—Unverified
Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations	Jun 12, 2019	Graph EmbeddingLink Prediction	CodeCode Available
Using Ontologies To Improve Performance In Massively Multi-label Prediction Models	May 28, 2019	Disease PredictionGeneral Classification	—Unverified
Using Ontologies To Improve Performance In Massively Multi-label Prediction	May 1, 2019	Disease PredictionGeneral Classification	—Unverified
Deep Robust Framework for Protein Function Prediction using Variable-Length Protein Sequences	Nov 4, 2018	Protein Function Prediction	—Unverified
Hierarchical Multi-Label Classification Networks	Jul 1, 2018	ClassificationGeneral Classification	—Unverified
Positive and Unlabeled Learning through Negative Selection and Imbalance-aware Classification	May 18, 2018	Active LearningGeneral Classification	—Unverified
ProLanGO: Protein Function Prediction Using Neural~Machine Translation Based on a Recurrent Neural Network	Oct 19, 2017	Machine TranslationPrediction	—Unverified
Multi-task Deep Neural Networks in Automated Protein Function Prediction	May 28, 2017	Drug DiscoveryProtein Function Prediction	—Unverified

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All datasets CASPSimSeq PaenSeq UniProtSeq

Benchmark Results

#	Model	Metric	Claimed	Verified	Status
1	GAL 120B	ROUGE-L	0.25	—	Unverified
2	GAL 30B	ROUGE-L	0.14	—	Unverified
3	GAL 6.7B	ROUGE-L	0.11	—	Unverified
4	GAL 1.3B	ROUGE-L	0.07	—	Unverified
5	GAL 125M	ROUGE-L	0.06	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	GAL 120B	ROUGE-L	0.27	—	Unverified
2	GAL 30B	ROUGE-L	0.2	—	Unverified
3	GAL 6.7B	ROUGE-L	0.14	—	Unverified
4	GAL 1.3B	ROUGE-L	0.08	—	Unverified
5	GAL 125M	ROUGE-L	0.07	—	Unverified

#	Model	Metric	Claimed	Verified	Status
1	GAL 120B	ROUGE-L	0.25	—	Unverified
2	GAL 30B	ROUGE-L	0.19	—	Unverified
3	GAL 6.7B	ROUGE-L	0.11	—	Unverified
4	GAL 1.3B	ROUGE-L	0.08	—	Unverified
5	GAL 125M	ROUGE-L	0.06	—	Unverified