SOTAVerified

Protein Function Prediction

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Papers

Showing 4150 of 79 papers

TitleStatusHype
InstructProtein: Aligning Human and Protein Language via Knowledge Instruction0
Contrastive Learning for Non-Local Graphs with Multi-Resolution Structural Views0
Biomedical Knowledge Graph Embeddings with Negative StatementsCode0
DeepGATGO: A Hierarchical Pretraining-Based Graph-Attention Model for Automatic Protein Function Prediction0
Self-supervised Learning and Graph Classification under Heterophily0
Linear-scaling kernels for protein sequences and small molecules outperform deep learning while providing uncertainty quantitation and improved interpretabilityCode0
Ankh: Optimized Protein Language Model Unlocks General-Purpose ModellingCode0
Reprogramming Pretrained Language Models for Protein Sequence Representation Learning0
EurNet: Efficient Multi-Range Relational Modeling of Spatial Multi-Relational DataCode0
A Review of Deep Learning Techniques for Protein Function Prediction0
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.14Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.07Unverified
5GAL 125MROUGE-L0.06Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.27Unverified
2GAL 30BROUGE-L0.2Unverified
3GAL 6.7BROUGE-L0.14Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.07Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.19Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.06Unverified