SOTAVerified

Protein Function Prediction

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Papers

Showing 2130 of 79 papers

TitleStatusHype
EurNet: Efficient Multi-Range Relational Modeling of Spatial Multi-Relational DataCode0
Biomedical Knowledge Graph Embeddings with Negative StatementsCode0
Ankh: Optimized Protein Language Model Unlocks General-Purpose ModellingCode0
Linear-scaling kernels for protein sequences and small molecules outperform deep learning while providing uncertainty quantitation and improved interpretabilityCode0
Encoding protein dynamic information in graph representation for functional residue identificationCode0
evoBPE: Evolutionary Protein Sequence TokenizationCode0
Multi-modal Representation Learning Enables Accurate Protein Function Prediction in Low-Data SettingCode0
Graph Embedding on Biomedical Networks: Methods, Applications, and EvaluationsCode0
AFDP: An Automated Function Description Prediction Approach to Improve Accuracy of Protein Function PredictionsCode0
MSNGO: multi-species protein function annotation based on 3D protein structure and network propagationCode0
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.14Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.07Unverified
5GAL 125MROUGE-L0.06Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.27Unverified
2GAL 30BROUGE-L0.2Unverified
3GAL 6.7BROUGE-L0.14Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.07Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.19Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.06Unverified