SOTAVerified

Protein Function Prediction

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Papers

Recently AddedMost HypedMost ActiveNeeds VerificationMost Verified

Showing 26–50 of 79 papers

TitleStatusHype
λ-Scaled-Attention: A Novel Fast Attention Mechanism for Efficient Modeling of Protein Sequences—0
Using Ontologies To Improve Performance In Massively Multi-label Prediction Models—0
Advances of Deep Learning in Protein Science: A Comprehensive Survey—0
An application of topological graph clustering to protein function prediction—0
An Effective GCN-based Hierarchical Multi-label classification for Protein Function Prediction—0
Application of three graph Laplacian based semi-supervised learning methods to protein function prediction problem—0
A Review of Deep Learning Techniques for Protein Function Prediction—0
Auto-clustering Output Layer: Automatic Learning of Latent Annotations in Neural Networks—0
Autoregressive Enzyme Function Prediction with Multi-scale Multi-modality Fusion—0
Combining graph and sequence information to learn protein representations—0
Computational Protein Science in the Era of Large Language Models (LLMs)—0
Contrastive Learning for Non-Local Graphs with Multi-Resolution Structural Views—0
Contrastive Representation Learning for 3D Protein Structures—0
DeepGATGO: A Hierarchical Pretraining-Based Graph-Attention Model for Automatic Protein Function Prediction—0
Deep Recurrent Neural Network for Protein Function Prediction from Sequence—0
Deep Robust Framework for Protein Function Prediction using Variable-Length Protein Sequences—0
Geometric Self-Supervised Pretraining on 3D Protein Structures using Subgraphs—0
GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction—0
Hashing for Protein Structure Similarity Search—0
ProteinEngine: Empower LLM with Domain Knowledge for Protein Engineering—0
Protein-Mamba: Biological Mamba Models for Protein Function Prediction—0
ProteinRPN: Towards Accurate Protein Function Prediction with Graph-Based Region Proposals—0
ProtNN: Fast and Accurate Nearest Neighbor Protein Function Prediction based on Graph Embedding in Structural and Topological Space—0
ProTranslator: zero-shot protein function prediction using textual description—0
ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models—0
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All datasetsCASPSimSeqPaenSeqUniProtSeq

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25—Unverified
2GAL 30BROUGE-L0.14—Unverified
3GAL 6.7BROUGE-L0.11—Unverified
4GAL 1.3BROUGE-L0.07—Unverified
5GAL 125MROUGE-L0.06—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.27—Unverified
2GAL 30BROUGE-L0.2—Unverified
3GAL 6.7BROUGE-L0.14—Unverified
4GAL 1.3BROUGE-L0.08—Unverified
5GAL 125MROUGE-L0.07—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25—Unverified
2GAL 30BROUGE-L0.19—Unverified
3GAL 6.7BROUGE-L0.11—Unverified
4GAL 1.3BROUGE-L0.08—Unverified
5GAL 125MROUGE-L0.06—Unverified