SOTAVerified

Protein Function Prediction

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Papers

Showing 2650 of 79 papers

TitleStatusHype
Protein 3D Graph Structure Learning for Robust Structure-based Protein Property Prediction0
InstructProtein: Aligning Human and Protein Language via Knowledge Instruction0
Insights Into the Inner Workings of Transformer Models for Protein Function PredictionCode1
Contrastive Learning for Non-Local Graphs with Multi-Resolution Structural Views0
Biomedical Knowledge Graph Embeddings with Negative StatementsCode0
Prot2Text: Multimodal Protein's Function Generation with GNNs and TransformersCode1
DeepGATGO: A Hierarchical Pretraining-Based Graph-Attention Model for Automatic Protein Function Prediction0
MD-HIT: Machine learning for materials property prediction with dataset redundancy controlCode1
Self-supervised Learning and Graph Classification under Heterophily0
Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language ModelsCode2
A Systematic Study of Joint Representation Learning on Protein Sequences and StructuresCode2
Linear-scaling kernels for protein sequences and small molecules outperform deep learning while providing uncertainty quantitation and improved interpretabilityCode0
Ankh: Optimized Protein Language Model Unlocks General-Purpose ModellingCode0
Reprogramming Pretrained Language Models for Protein Sequence Representation Learning0
EurNet: Efficient Multi-Range Relational Modeling of Spatial Multi-Relational DataCode0
Galactica: A Large Language Model for ScienceCode4
A Review of Deep Learning Techniques for Protein Function Prediction0
Deep learning-based rapid generation of broadly reactive antibodies against SARS-CoV-2 and its Omicron variantCode1
PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence UnderstandingCode1
Robust deep learning based protein sequence design using ProteinMPNNCode3
Contrastive Representation Learning for 3D Protein Structures0
ProTranslator: zero-shot protein function prediction using textual description0
Multi-Scale Representation Learning on ProteinsCode1
Graph Self-supervised Learning with Accurate Discrepancy LearningCode1
OntoProtein: Protein Pretraining With Gene Ontology EmbeddingCode1
Show:102550
← PrevPage 2 of 4Next →

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.14Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.07Unverified
5GAL 125MROUGE-L0.06Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.27Unverified
2GAL 30BROUGE-L0.2Unverified
3GAL 6.7BROUGE-L0.14Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.07Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.19Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.06Unverified