SOTAVerified

Protein Function Prediction

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Papers

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Showing 1–25 of 79 papers

TitleStatusHype
AnnoDPO: Protein Functional Annotation Learning with Direct Preference OptimizationCode0
Into the Unknown: From Structure to Disorder in Protein Function Prediction—0
STELLA: Towards Protein Function Prediction with Multimodal LLMs Integrating Sequence-Structure Representations—0
MSNGO: multi-species protein function annotation based on 3D protein structure and network propagationCode0
ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models—0
evoBPE: Evolutionary Protein Sequence TokenizationCode0
Computational Protein Science in the Era of Large Language Models (LLMs)—0
GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction—0
ProtCLIP: Function-Informed Protein Multi-Modal Learning—0
ProtBoost: protein function prediction with Py-Boost and Graph Neural Networks -- CAFA5 top2 solutionCode1
Multi-modal Representation Learning Enables Accurate Protein Function Prediction in Low-Data SettingCode0
SCOP: A Sequence-Structure Contrast-Aware Framework for Protein Function PredictionCode0
Hashing for Protein Structure Similarity Search—0
DeepProtein: Deep Learning Library and Benchmark for Protein Sequence LearningCode1
Protein-Mamba: Biological Mamba Models for Protein Function Prediction—0
ProteinRPN: Towards Accurate Protein Function Prediction with Graph-Based Region Proposals—0
Autoregressive Enzyme Function Prediction with Multi-scale Multi-modality Fusion—0
A Vectorization Method Induced By Maximal Margin Classification For Persistent Diagrams—0
Geometric Self-Supervised Pretraining on 3D Protein Structures using Subgraphs—0
ProtFAD: Introducing function-aware domains as implicit modality towards protein function predictionCode0
ProteinEngine: Empower LLM with Domain Knowledge for Protein Engineering—0
HeMeNet: Heterogeneous Multichannel Equivariant Network for Protein Multitask Learning—0
Advances of Deep Learning in Protein Science: A Comprehensive Survey—0
Structure-Informed Protein Language ModelCode1
Endowing Protein Language Models with Structural KnowledgeCode1
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All datasetsCASPSimSeqPaenSeqUniProtSeq

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25—Unverified
2GAL 30BROUGE-L0.14—Unverified
3GAL 6.7BROUGE-L0.11—Unverified
4GAL 1.3BROUGE-L0.07—Unverified
5GAL 125MROUGE-L0.06—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.27—Unverified
2GAL 30BROUGE-L0.2—Unverified
3GAL 6.7BROUGE-L0.14—Unverified
4GAL 1.3BROUGE-L0.08—Unverified
5GAL 125MROUGE-L0.07—Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25—Unverified
2GAL 30BROUGE-L0.19—Unverified
3GAL 6.7BROUGE-L0.11—Unverified
4GAL 1.3BROUGE-L0.08—Unverified
5GAL 125MROUGE-L0.06—Unverified