SOTAVerified

Protein Function Prediction

For GO terms prediction, given the specific function prediction instruction and a protein sequence, models characterize the protein functions using the GO terms presented in three different domains (cellular component, biological process, and molecular function).

Papers

Showing 125 of 79 papers

TitleStatusHype
Galactica: A Large Language Model for ScienceCode4
Robust deep learning based protein sequence design using ProteinMPNNCode3
Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language ModelsCode2
A Systematic Study of Joint Representation Learning on Protein Sequences and StructuresCode2
ProtBoost: protein function prediction with Py-Boost and Graph Neural Networks -- CAFA5 top2 solutionCode1
DeepProtein: Deep Learning Library and Benchmark for Protein Sequence LearningCode1
Structure-Informed Protein Language ModelCode1
Endowing Protein Language Models with Structural KnowledgeCode1
Insights Into the Inner Workings of Transformer Models for Protein Function PredictionCode1
Prot2Text: Multimodal Protein's Function Generation with GNNs and TransformersCode1
MD-HIT: Machine learning for materials property prediction with dataset redundancy controlCode1
Deep learning-based rapid generation of broadly reactive antibodies against SARS-CoV-2 and its Omicron variantCode1
PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence UnderstandingCode1
Multi-Scale Representation Learning on ProteinsCode1
Graph Self-supervised Learning with Accurate Discrepancy LearningCode1
OntoProtein: Protein Pretraining With Gene Ontology EmbeddingCode1
Coherent Hierarchical Multi-Label Classification NetworksCode1
Strategies for Pre-training Graph Neural NetworksCode1
AnnoDPO: Protein Functional Annotation Learning with Direct Preference OptimizationCode0
Into the Unknown: From Structure to Disorder in Protein Function Prediction0
STELLA: Towards Protein Function Prediction with Multimodal LLMs Integrating Sequence-Structure Representations0
MSNGO: multi-species protein function annotation based on 3D protein structure and network propagationCode0
evoBPE: Evolutionary Protein Sequence TokenizationCode0
ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models0
Computational Protein Science in the Era of Large Language Models (LLMs)0
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.14Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.07Unverified
5GAL 125MROUGE-L0.06Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.27Unverified
2GAL 30BROUGE-L0.2Unverified
3GAL 6.7BROUGE-L0.14Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.07Unverified
#ModelMetricClaimedVerifiedStatus
1GAL 120BROUGE-L0.25Unverified
2GAL 30BROUGE-L0.19Unverified
3GAL 6.7BROUGE-L0.11Unverified
4GAL 1.3BROUGE-L0.08Unverified
5GAL 125MROUGE-L0.06Unverified