| Variational Encoding of Complex Dynamics | Nov 23, 2017 | Protein FoldingTime Series | CodeCode Available | 0 | 5 |
| Foundation Inference Models for Markov Jump Processes | Jun 10, 2024 | Protein Folding | —Unverified | 0 | 0 |
| Friends in need: how chaperonins recognize and remodel proteins that require folding assistance | Nov 16, 2022 | Protein Folding | —Unverified | 0 | 0 |
| From evolution to folding of repeat proteins | Feb 24, 2022 | Protein Folding | —Unverified | 0 | 0 |
| GANs and Closures: Micro-Macro Consistency in Multiscale Modeling | Aug 23, 2022 | Dimensionality ReductionProtein Folding | —Unverified | 0 | 0 |
| Generalization Properties of Retrieval-based Models | Oct 6, 2022 | Protein FoldingRetrieval | —Unverified | 0 | 0 |
| Generalized Flow Matching for Transition Dynamics Modeling | Oct 19, 2024 | Protein Folding | —Unverified | 0 | 0 |
| Genetic prediction of quantitative traits: a machine learner's guide focused on height | Oct 6, 2023 | feature selectionProtein Folding | —Unverified | 0 | 0 |
| Geometric Signatures of Switching Behavior in Mechanobiology | Sep 7, 2022 | Protein Folding | —Unverified | 0 | 0 |
| GPU accelerated enumeration and exploration of HP model genotype-phenotype maps for protein folding | Aug 1, 2020 | CPUGPU | —Unverified | 0 | 0 |
| GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules | Jan 12, 2022 | Graph Representation Learningmolecular representation | —Unverified | 0 | 0 |
| Hallucination, reliability, and the role of generative AI in science | Apr 11, 2025 | HallucinationProtein Folding | —Unverified | 0 | 0 |
| Inferring protein folding mechanisms from natural sequence diversity | Dec 18, 2024 | DiversityProtein Folding | —Unverified | 0 | 0 |
| Intra-protein binding peptide fragments have specific and intrinsic sequence patterns | Feb 26, 2017 | Protein Folding | —Unverified | 0 | 0 |
| Introduction to Protein Folding | Jul 5, 2023 | Protein FoldingProtein Structure Prediction | —Unverified | 0 | 0 |
| Introduction to Protein Structure | Jul 5, 2023 | Protein FoldingProtein Structure Prediction | —Unverified | 0 | 0 |
| Invariance-Aware Randomized Smoothing Certificates | Nov 25, 2022 | Molecular Property PredictionProperty Prediction | —Unverified | 0 | 0 |
| Inverse Protein Folding Using Deep Bayesian Optimization | May 25, 2023 | Bayesian OptimizationProtein Folding | —Unverified | 0 | 0 |
| Lattice Protein Folding with Variational Annealing | Feb 28, 2025 | Combinatorial OptimizationDrug Design | —Unverified | 0 | 0 |
| Learning dynamical systems from data: Gradient-based dictionary optimization | Nov 7, 2024 | Protein Folding | —Unverified | 0 | 0 |
| Learning Geometrically Disentangled Representations of Protein Folding Simulations | May 20, 2022 | Protein Folding | —Unverified | 0 | 0 |
| Learning noise-induced transitions by multi-scaling reservoir computing | Sep 11, 2023 | Protein FoldingTime Series | —Unverified | 0 | 0 |
| Learning Protein Structure with a Differentiable Simulator | May 1, 2019 | Protein Folding | —Unverified | 0 | 0 |
| LightNobel: Improving Sequence Length Limitation in Protein Structure Prediction Model via Adaptive Activation Quantization | May 9, 2025 | Protein FoldingProtein Structure Prediction | —Unverified | 0 | 0 |
| LoRTA: Low Rank Tensor Adaptation of Large Language Models | Oct 5, 2024 | Natural Language Understandingparameter-efficient fine-tuning | —Unverified | 0 | 0 |
| Machine Learning and Big Scientific Data | Oct 12, 2019 | BIG-bench Machine LearningDeep Learning | —Unverified | 0 | 0 |
| Machine learning for protein folding and dynamics | Nov 22, 2019 | BIG-bench Machine LearningProtein Folding | —Unverified | 0 | 0 |
| Mimetic Neural Networks: A unified framework for Protein Design and Folding | Feb 7, 2021 | BIG-bench Machine LearningProtein Design | —Unverified | 0 | 0 |
| Molecular Diffusion Models with Virtual Receptors | Jun 26, 2024 | Drug DesignProtein Folding | —Unverified | 0 | 0 |
| Molecular information theory meets protein folding | Jun 29, 2022 | Protein Folding | —Unverified | 0 | 0 |
| Multi-level Protein Representation Learning for Blind Mutational Effect Prediction | Jun 8, 2023 | Protein FoldingRepresentation Learning | —Unverified | 0 | 0 |
| Neighborhood Information-based Probabilistic Algorithm for Network Disintegration | Mar 8, 2020 | Protein Folding | —Unverified | 0 | 0 |
| Normalizing Flows on Riemannian Manifolds | Nov 7, 2016 | Density EstimationProtein Folding | —Unverified | 0 | 0 |
| On the Robustness of AlphaFold: A COVID-19 Case Study | Jan 10, 2023 | Protein Folding | —Unverified | 0 | 0 |
| On the scale-free nature of RNA secondary structure networks | Jun 30, 2018 | Protein Folding | —Unverified | 0 | 0 |
| Optimal Strategy for Stabilizing Protein Folding Intermediates | Jul 28, 2024 | Protein Folding | —Unverified | 0 | 0 |
| P: A Universal Measure of Predictive Intelligence | May 30, 2025 | Protein Folding | —Unverified | 0 | 0 |
| Predicting protein folding dynamics using sequence information | May 22, 2025 | Protein Folding | —Unverified | 0 | 0 |
| Prediction of amino acid side chain conformation using a deep neural network | Jul 26, 2017 | PredictionProtein Design | —Unverified | 0 | 0 |
| Predictive landscapes hidden beneath biological cellular automata | May 5, 2021 | Protein Folding | —Unverified | 0 | 0 |
| Prompt-Guided Injection of Conformation to Pre-trained Protein Model | Feb 7, 2022 | Language ModelingLanguage Modelling | —Unverified | 0 | 0 |
| Protein Folding: From Classical Issues to a New Perspective | Aug 5, 2022 | Protein Folding | —Unverified | 0 | 0 |
| Protein folding classes -- High-dimensional geometry of amino acid composition space revisited | Jun 2, 2025 | DescriptiveProtein Folding | —Unverified | 0 | 0 |
| Protein Folding Neural Networks Are Not Robust | Sep 9, 2021 | Adversarial AttackProtein Folding | —Unverified | 0 | 0 |
| Protein Folding Optimization using Differential Evolution Extended with Local Search and Component Reinitialization | Oct 19, 2017 | Protein Folding | —Unverified | 0 | 0 |
| Protein folding simulations in the hydrophobic-polar model using a hybrid cuckoo search algorithm | May 22, 2021 | Protein Folding | —Unverified | 0 | 0 |
| Protein Folding/Unfolding Phenomenon is originated by Synchronization/Desynchronization of Instantaneously Induced Oscillating Dipoles. A Hypothesis | Sep 4, 2020 | Protein Folding | —Unverified | 0 | 0 |
| Protein Inverse Folding From Structure Feedback | Jun 3, 2025 | Protein Folding | —Unverified | 0 | 0 |
| Protein residue networks from a local search perspective | Nov 30, 2015 | DiversityProtein Folding | —Unverified | 0 | 0 |
| Quadratic Optimization-Based Nonlinear Control for Protein Conformation Prediction | Apr 27, 2021 | Protein Folding | —Unverified | 0 | 0 |