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Protein Folding

Papers

Showing 150 of 185 papers

TitleStatusHype
Robust deep learning based protein sequence design using ProteinMPNNCode3
Highly accurate protein structure prediction with AlphaFoldCode3
ReQFlow: Rectified Quaternion Flow for Efficient and High-Quality Protein Backbone GenerationCode2
State-specific protein-ligand complex structure prediction with a multi-scale deep generative modelCode2
PyMOLfold: Interactive Protein and Ligand Structure Prediction in PyMOLCode2
Geometric Deep Learning: Grids, Groups, Graphs, Geodesics, and GaugesCode2
MegaFold: System-Level Optimizations for Accelerating Protein Structure Prediction ModelsCode2
Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path SamplingCode2
AlphaFold Distillation for Protein DesignCode1
Enhancing the Protein Tertiary Structure Prediction by Multiple Sequence Alignment GenerationCode1
TorchMD: A deep learning framework for molecular simulationsCode1
PolyFold: an interactive visual simulator for distance-based protein foldingCode1
Pareto Dominance Archive and Coordinated Selection Strategy-Based Many-Objective Optimizer for Protein Structure PredictionCode1
Bridge-IF: Learning Inverse Protein Folding with Markov BridgesCode1
Solvent: A Framework for Protein FoldingCode1
Towards Expert-Level Medical Question Answering with Large Language ModelsCode1
Probably Approximately Correct LabelsCode1
ParaFold: Paralleling AlphaFold for Large-Scale PredictionsCode1
PS4: a Next-Generation Dataset for Protein Single Sequence Secondary Structure PredictionCode1
Rethinking Neural Operations for Diverse TasksCode1
TourSynbio: A Multi-Modal Large Model and Agent Framework to Bridge Text and Protein Sequences for Protein EngineeringCode1
Efficient Architecture Search for Diverse TasksCode1
Protein Language Models and Structure Prediction: Connection and ProgressionCode1
Mask prior-guided denoising diffusion improves inverse protein foldingCode1
AlphaDesign: A graph protein design method and benchmark on AlphaFoldDBCode1
Graph Denoising Diffusion for Inverse Protein FoldingCode1
Mega-scale experimental analysis of protein folding stability in biology and designCode1
Progressive Multi-Modality Learning for Inverse Protein FoldingCode1
Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein StructuresCode1
Collective Variable for Metadynamics Derived from AlphaFold Output0
CoHSI III: Long proteins and implications for protein evolution0
Analyzing the Performance of Graph Neural Networks with Pipe Parallelism0
Analysis of proteins in the light of mutations0
Chetaev Instability Framework for Kinetostatic Compliance-Based Protein Unfolding0
A glass-box interactive machine learning approach for solving NP-hard problems with the human-in-the-loop0
Exploring generative atomic models in cryo-EM reconstruction0
Characterizing SARS-CoV-2 mutations in the United States0
Chaos of Protein Folding0
Analysis and prediction of protein folding energy changes upon mutation by element specific persistent homology0
Central Dogma Cycle and Network: A Model for Cell Memory0
Economic impacts of AI-augmented R&D0
Adaptive Markov State Model estimation using short reseeding trajectories0
Accelerated Sampling of Rare Events using a Neural Network Bias Potential0
FAFE: Immune Complex Modeling with Geodesic Distance Loss on Noisy Group Frames0
EBM-Fold: Fully-Differentiable Protein Folding Powered by Energy-based Models0
Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example0
DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design0
Effect of protein structure on evolution of cotranslational folding0
A topological study of protein folding kinetics0
A method for partitioning the information contained in a protein sequence between its structure and function0
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