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Protein Folding

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TitleStatusHype
MegaFold: System-Level Optimizations for Accelerating Protein Structure Prediction ModelsCode2
Central Dogma Cycle and Network: A Model for Cell Memory—0
Probably Approximately Correct LabelsCode1
Protein Inverse Folding From Structure Feedback—0
Protein folding classes -- High-dimensional geometry of amino acid composition space revisited—0
P: A Universal Measure of Predictive Intelligence—0
Simultaneous Modeling of Protein Conformation and Dynamics via Autoregression—0
Predicting protein folding dynamics using sequence information—0
DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design—0
LightNobel: Improving Sequence Length Limitation in Protein Structure Prediction Model via Adaptive Activation Quantization—0
Hallucination, reliability, and the role of generative AI in science—0
Lattice Protein Folding with Variational Annealing—0
A Novel P-bit-based Probabilistic Computing Approach for Solving the 3-D Protein Folding Problem—0
ReQFlow: Rectified Quaternion Flow for Efficient and High-Quality Protein Backbone GenerationCode2
Fluorescence Phasor Analysis: Basic Principles and Biophysical Applications—0
PyMOLfold: Interactive Protein and Ligand Structure Prediction in PyMOLCode2
Inferring protein folding mechanisms from natural sequence diversity—0
Mask prior-guided denoising diffusion improves inverse protein foldingCode1
Validation of an LLM-based Multi-Agent Framework for Protein Engineering in Dry Lab and Wet Lab—0
Learning dynamical systems from data: Gradient-based dictionary optimization—0
Bridge-IF: Learning Inverse Protein Folding with Markov BridgesCode1
Generalized Flow Matching for Transition Dynamics Modeling—0
RapidDock: Unlocking Proteome-scale Molecular Docking—0
Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path SamplingCode2
LoRTA: Low Rank Tensor Adaptation of Large Language Models—0
Spectral Map for Slow Collective Variables, Markovian Dynamics, and Transition State Ensembles—0
TourSynbio: A Multi-Modal Large Model and Agent Framework to Bridge Text and Protein Sequences for Protein EngineeringCode1
Self-folding Self-replication—0
Optimal Strategy for Stabilizing Protein Folding Intermediates—0
FAFE: Immune Complex Modeling with Geodesic Distance Loss on Noisy Group Frames—0
Molecular Diffusion Models with Virtual Receptors—0
Foundation Inference Models for Markov Jump Processes—0
ScaleFold: Reducing AlphaFold Initial Training Time to 10 Hours—0
The Origin of Mutational Epistasis—0
Clustering for Protein Representation LearningCode0
SGNet: Folding Symmetrical Protein Complex with Deep Learning—0
An Evaluation of Real-time Adaptive Sampling Change Point Detection Algorithm using KCUSUM—0
Learning Collective Variables with Synthetic Data Augmentation through Physics-Inspired Geodesic InterpolationCode0
A Study of Acquisition Functions for Medical Imaging Deep Active LearningCode0
Accelerated Sampling of Rare Events using a Neural Network Bias Potential—0
Reassessing the Exon-Foldon correspondence using Frustration AnalysisCode0
Progressive Multi-Modality Learning for Inverse Protein FoldingCode1
Computational Explorations in Biomedicine: Unraveling Molecular Dynamics for Cancer, Drug Delivery, and Biomolecular Insights using LAMMPS Simulations—0
Analysis of proteins in the light of mutations—0
Terahertz Induced Protein Interactions in a Random Medium—0
Genetic prediction of quantitative traits: a machine learner's guide focused on height—0
End-to-End Optimized Pipeline for Prediction of Protein Folding Kinetics—0
Learning noise-induced transitions by multi-scaling reservoir computing—0
The known unknowns of the Hsp90 chaperone—0
Sign Gradient Descent Algorithms for Kinetostatic Protein Folding—0
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