| MegaFold: System-Level Optimizations for Accelerating Protein Structure Prediction Models | Jun 24, 2025 | GPUProtein Folding | CodeCode Available | 2 |
| Central Dogma Cycle and Network: A Model for Cell Memory | Jun 19, 2025 | Protein Folding | —Unverified | 0 |
| Probably Approximately Correct Labels | Jun 12, 2025 | Protein Foldingtext annotation | CodeCode Available | 1 |
| Protein Inverse Folding From Structure Feedback | Jun 3, 2025 | Protein Folding | —Unverified | 0 |
| Protein folding classes -- High-dimensional geometry of amino acid composition space revisited | Jun 2, 2025 | DescriptiveProtein Folding | —Unverified | 0 |
| P: A Universal Measure of Predictive Intelligence | May 30, 2025 | Protein Folding | —Unverified | 0 |
| Simultaneous Modeling of Protein Conformation and Dynamics via Autoregression | May 23, 2025 | Protein Folding | —Unverified | 0 |
| Predicting protein folding dynamics using sequence information | May 22, 2025 | Protein Folding | —Unverified | 0 |
| DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design | May 18, 2025 | Language ModelingLanguage Modelling | —Unverified | 0 |
| LightNobel: Improving Sequence Length Limitation in Protein Structure Prediction Model via Adaptive Activation Quantization | May 9, 2025 | Protein FoldingProtein Structure Prediction | —Unverified | 0 |
| Hallucination, reliability, and the role of generative AI in science | Apr 11, 2025 | HallucinationProtein Folding | —Unverified | 0 |
| Lattice Protein Folding with Variational Annealing | Feb 28, 2025 | Combinatorial OptimizationDrug Design | —Unverified | 0 |
| A Novel P-bit-based Probabilistic Computing Approach for Solving the 3-D Protein Folding Problem | Feb 27, 2025 | Protein Folding | —Unverified | 0 |
| ReQFlow: Rectified Quaternion Flow for Efficient and High-Quality Protein Backbone Generation | Feb 20, 2025 | 3D Molecule GenerationProtein Design | CodeCode Available | 2 |
| Fluorescence Phasor Analysis: Basic Principles and Biophysical Applications | Feb 14, 2025 | Protein Folding | —Unverified | 0 |
| PyMOLfold: Interactive Protein and Ligand Structure Prediction in PyMOL | Feb 1, 2025 | PredictionProtein Folding | CodeCode Available | 2 |
| Inferring protein folding mechanisms from natural sequence diversity | Dec 18, 2024 | DiversityProtein Folding | —Unverified | 0 |
| Mask prior-guided denoising diffusion improves inverse protein folding | Dec 10, 2024 | DenoisingProtein Folding | CodeCode Available | 1 |
| Validation of an LLM-based Multi-Agent Framework for Protein Engineering in Dry Lab and Wet Lab | Nov 9, 2024 | Protein DesignProtein Folding | —Unverified | 0 |
| Learning dynamical systems from data: Gradient-based dictionary optimization | Nov 7, 2024 | Protein Folding | —Unverified | 0 |
| Bridge-IF: Learning Inverse Protein Folding with Markov Bridges | Nov 4, 2024 | Protein DesignProtein Folding | CodeCode Available | 1 |
| Generalized Flow Matching for Transition Dynamics Modeling | Oct 19, 2024 | Protein Folding | —Unverified | 0 |
| RapidDock: Unlocking Proteome-scale Molecular Docking | Oct 16, 2024 | Drug DiscoveryGPU | —Unverified | 0 |
| Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path Sampling | Oct 10, 2024 | Protein Folding | CodeCode Available | 2 |
| LoRTA: Low Rank Tensor Adaptation of Large Language Models | Oct 5, 2024 | Natural Language Understandingparameter-efficient fine-tuning | —Unverified | 0 |