| Robust deep learning based protein sequence design using ProteinMPNN | Jun 4, 2022 | Deep LearningDrug Discovery | CodeCode Available | 3 |
| Highly accurate protein structure prediction with AlphaFold | Jul 15, 2021 | PredictionProtein Folding | CodeCode Available | 3 |
| MegaFold: System-Level Optimizations for Accelerating Protein Structure Prediction Models | Jun 24, 2025 | GPUProtein Folding | CodeCode Available | 2 |
| ReQFlow: Rectified Quaternion Flow for Efficient and High-Quality Protein Backbone Generation | Feb 20, 2025 | 3D Molecule GenerationProtein Design | CodeCode Available | 2 |
| PyMOLfold: Interactive Protein and Ligand Structure Prediction in PyMOL | Feb 1, 2025 | PredictionProtein Folding | CodeCode Available | 2 |
| Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path Sampling | Oct 10, 2024 | Protein Folding | CodeCode Available | 2 |
| State-specific protein-ligand complex structure prediction with a multi-scale deep generative model | Sep 30, 2022 | BenchmarkingBlind Docking | CodeCode Available | 2 |
| Geometric Deep Learning: Grids, Groups, Graphs, Geodesics, and Gauges | Apr 27, 2021 | Deep LearningProtein Folding | CodeCode Available | 2 |
| Probably Approximately Correct Labels | Jun 12, 2025 | Protein Foldingtext annotation | CodeCode Available | 1 |
| Mask prior-guided denoising diffusion improves inverse protein folding | Dec 10, 2024 | DenoisingProtein Folding | CodeCode Available | 1 |
