SOTAVerified

Protein Design

Formally, given the design requirements of users, models are required to generate protein amino acid sequences that align with those requirements.

Papers

Recently AddedMost HypedMost ActiveNeeds VerificationMost Verified

Showing 61–70 of 175 papers

TitleStatusHype
Metalic: Meta-Learning In-Context with Protein Language ModelsCode1
Computational design of target-specific linear peptide binders with TransformerBeta—0
Plug-and-Play Controllable Generation for Discrete Masked Models—0
Towards deep learning sequence-structure co-generation for protein design—0
Optimistic Games for Combinatorial Bayesian Optimization with Application to Protein Design—0
Recent advances in interpretable machine learning using structure-based protein representations—0
De novo design of high-affinity protein binders with AlphaProteo—0
ProteinBench: A Holistic Evaluation of Protein Foundation Models—0
Leveraging Deep Generative Model For Computational Protein Design And Optimization—0
BERT and LLMs-Based avGFP Brightness Prediction and Mutation Design—0
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All datasetsCATH 4.2CATH 4.3

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GraphTransPerplexity6.63—Unverified
2StructGNNPerplexity6.4—Unverified
3AlphaDesignPerplexity6.3—Unverified
4GCAPerplexity6.05—Unverified
5GVPPerplexity5.36—Unverified
6ProteinMPNNPerplexity4.61—Unverified
7PiFoldPerplexity4.55—Unverified
8Knowledge-DesignPerplexity3.46—Unverified
#ModelMetricClaimedVerifiedStatus
1ESM-IFPerplexity6.44—Unverified
2GVP-largePerplexity6.17—Unverified