SOTAVerified

Protein Design

Formally, given the design requirements of users, models are required to generate protein amino acid sequences that align with those requirements.

Papers

Showing 3140 of 175 papers

TitleStatusHype
Persistent Sheaf Laplacian Analysis of Protein FlexibilityCode0
Fast and Accurate Antibody Sequence Design via Structure Retrieval0
Steering Protein Family Design through Profile Bayesian Flow0
Iterative Importance Fine-tuning of Diffusion Models0
A Variational Perspective on Generative Protein Fitness Optimization0
Controllable Protein Sequence Generation with LLM Preference OptimizationCode1
Computational Protein Science in the Era of Large Language Models (LLMs)0
Inference-Time Alignment in Diffusion Models with Reward-Guided Generation: Tutorial and ReviewCode0
A General Framework for Inference-time Scaling and Steering of Diffusion ModelsCode3
From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering0
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GraphTransPerplexity6.63Unverified
2StructGNNPerplexity6.4Unverified
3AlphaDesignPerplexity6.3Unverified
4GCAPerplexity6.05Unverified
5GVPPerplexity5.36Unverified
6ProteinMPNNPerplexity4.61Unverified
7PiFoldPerplexity4.55Unverified
8Knowledge-DesignPerplexity3.46Unverified
#ModelMetricClaimedVerifiedStatus
1ESM-IFPerplexity6.44Unverified
2GVP-largePerplexity6.17Unverified