SOTAVerified

Protein Design

Formally, given the design requirements of users, models are required to generate protein amino acid sequences that align with those requirements.

Papers

Showing 131140 of 175 papers

TitleStatusHype
ProtDAT: A Unified Framework for Protein Sequence Design from Any Protein Text Description0
A Survey of Deep Learning Methods in Protein Bioinformatics and its Impact on Protein Design0
ProteinBench: A Holistic Evaluation of Protein Foundation Models0
Protein design by multiobjective optimization: evolutionary and non-evolutionary approaches0
Protein Design with Dynamic Protein Vocabulary0
Applying computational protein design to therapeutic antibody discovery -- current state and perspectives0
ProteinEngine: Empower LLM with Domain Knowledge for Protein Engineering0
UniIF: Unified Molecule Inverse Folding0
Protein Structure Prediction until CASP150
ProteinWeaver: A Divide-and-Assembly Approach for Protein Backbone Design0
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GraphTransPerplexity6.63Unverified
2StructGNNPerplexity6.4Unverified
3AlphaDesignPerplexity6.3Unverified
4GCAPerplexity6.05Unverified
5GVPPerplexity5.36Unverified
6ProteinMPNNPerplexity4.61Unverified
7PiFoldPerplexity4.55Unverified
8Knowledge-DesignPerplexity3.46Unverified
#ModelMetricClaimedVerifiedStatus
1ESM-IFPerplexity6.44Unverified
2GVP-largePerplexity6.17Unverified