SOTAVerified

Protein Design

Formally, given the design requirements of users, models are required to generate protein amino acid sequences that align with those requirements.

Papers

Showing 131140 of 175 papers

TitleStatusHype
Backdiff: a diffusion model for generalized transferable protein backmapping0
Boosting AND/OR-Based Computational Protein Design: Dynamic Heuristics and Generalizable UFO0
Metropolis Sampling for Constrained Diffusion Models0
Gradient-Informed Quality Diversity for the Illumination of Discrete Spaces0
Robust Model-Based Optimization for Challenging Fitness LandscapesCode0
Scalable Coupling of Deep Learning with Logical ReasoningCode0
CCPL: Cross-modal Contrastive Protein Learning0
Protein Sequence Design with Batch Bayesian OptimisationCode0
Diffusion Models in Bioinformatics: A New Wave of Deep Learning Revolution in Action0
Protein Structure Prediction until CASP150
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Benchmark Results

#ModelMetricClaimedVerifiedStatus
1GraphTransPerplexity6.63Unverified
2StructGNNPerplexity6.4Unverified
3AlphaDesignPerplexity6.3Unverified
4GCAPerplexity6.05Unverified
5GVPPerplexity5.36Unverified
6ProteinMPNNPerplexity4.61Unverified
7PiFoldPerplexity4.55Unverified
8Knowledge-DesignPerplexity3.46Unverified
#ModelMetricClaimedVerifiedStatus
1ESM-IFPerplexity6.44Unverified
2GVP-largePerplexity6.17Unverified