Multi-modal Contrastive Learning with Negative Sampling Calibration for Phenotypic Drug Discovery Jan 1, 2025 Contrastive Learning Drug Discovery
— Unverified 0Revisiting Graph Neural Networks on Graph-level Tasks: Comprehensive Experiments, Analysis, and Improvements Jan 1, 2025 Contrastive Learning Graph Classification
— Unverified 0FastCHGNet: Training one Universal Interatomic Potential to 1.5 Hours with 32 GPUs Dec 30, 2024 GPU Graph Neural Network
— Unverified 0Virtual Nodes Can Help: Tackling Distribution Shifts in Federated Graph Learning Dec 26, 2024 Graph Learning Graph Property Prediction
Code Code Available 0Data-Driven Self-Supervised Graph Representation Learning Dec 24, 2024 Data Augmentation Document Classification
Code Code Available 0Category-Specific Topological Learning of Metal-Organic Frameworks Dec 16, 2024 Interpretable Machine Learning Property Prediction
— Unverified 0EvoLlama: Enhancing LLMs' Understanding of Proteins via Multimodal Structure and Sequence Representations Dec 16, 2024 Property Prediction
— Unverified 0RingFormer: A Ring-Enhanced Graph Transformer for Organic Solar Cell Property Prediction Dec 12, 2024 Graph Representation Learning Molecular Property Prediction
Code Code Available 0Language model driven: a PROTAC generation pipeline with dual constraints of structure and property Dec 12, 2024 Drug Discovery Language Modeling
— Unverified 0Tokenizing 3D Molecule Structure with Quantized Spherical Coordinates Dec 2, 2024 molecular representation Property Prediction
— Unverified 0MolMetaLM: a Physicochemical Knowledge-Guided Molecular Meta Language Model Nov 23, 2024 Language Modeling Language Modelling
Code Code Available 0Assessing data-driven predictions of band gap and electrical conductivity for transparent conducting materials Nov 21, 2024 Band Gap Property Prediction
— Unverified 0Investigating Graph Neural Networks and Classical Feature-Extraction Techniques in Activity-Cliff and Molecular Property Prediction Nov 20, 2024 Drug Discovery Molecular Property Prediction
— Unverified 0Reflections from the 2024 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry Nov 20, 2024 Language Modeling Language Modelling
Code Code Available 0SeqProFT: Applying LoRA Finetuning for Sequence-only Protein Property Predictions Nov 18, 2024 Property Prediction regression
— Unverified 0Cuvis.Ai: An Open-Source, Low-Code Software Ecosystem for Hyperspectral Processing and Classification Nov 18, 2024 Property Prediction
Code Code Available 0GeomCLIP: Contrastive Geometry-Text Pre-training for Molecules Nov 16, 2024 Denoising Molecular Property Prediction
Code Code Available 0Material Property Prediction with Element Attribute Knowledge Graphs and Multimodal Representation Learning Nov 13, 2024 Attribute Formation Energy
— Unverified 0Two-Stage Pretraining for Molecular Property Prediction in the Wild Nov 5, 2024 Denoising Molecular Property Prediction
— Unverified 0Pin-Tuning: Parameter-Efficient In-Context Tuning for Few-Shot Molecular Property Prediction Nov 2, 2024 Attribute Drug Discovery
Code Code Available 0MolCap-Arena: A Comprehensive Captioning Benchmark on Language-Enhanced Molecular Property Prediction Nov 1, 2024 Molecular Property Prediction Property Prediction
Code Code Available 0Subgraph Aggregation for Out-of-Distribution Generalization on Graphs Oct 29, 2024 Molecular Property Prediction Out-of-Distribution Generalization
Code Code Available 0PepDoRA: A Unified Peptide Language Model via Weight-Decomposed Low-Rank Adaptation Oct 28, 2024 Activity Prediction Contrastive Learning
— Unverified 0Contextual Representation Anchor Network to Alleviate Selection Bias in Few-Shot Drug Discovery Oct 28, 2024 Drug Discovery Few-Shot Learning
— Unverified 0Homomorphism Counts as Structural Encodings for Graph Learning Oct 24, 2024 Graph Learning Molecular Property Prediction
Code Code Available 0From Tokens to Materials: Leveraging Language Models for Scientific Discovery Oct 21, 2024 Language Modeling Language Modelling
Code Code Available 0Explaining Graph Neural Networks with Large Language Models: A Counterfactual Perspective for Molecular Property Prediction Oct 19, 2024 counterfactual Counterfactual Explanation
Code Code Available 0Text-Guided Multi-Property Molecular Optimization with a Diffusion Language Model Oct 17, 2024 Drug Discovery Language Modeling
— Unverified 0HELM: Hierarchical Encoding for mRNA Language Modeling Oct 16, 2024 Language Modeling Language Modelling
— Unverified 0Beyond Sequence: Impact of Geometric Context for RNA Property Prediction Oct 15, 2024 Computational Efficiency Property Prediction
— Unverified 0Large-Scale Knowledge Integration for Enhanced Molecular Property Prediction Oct 15, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 0KA-GNN: Kolmogorov-Arnold Graph Neural Networks for Molecular Property Prediction Oct 15, 2024 Drug Discovery Graph Attention
— Unverified 0UniGEM: A Unified Approach to Generation and Property Prediction for Molecules Oct 14, 2024 Drug Discovery Molecular Property Prediction
— Unverified 0WGFormer: An SE(3)-Transformer Driven by Wasserstein Gradient Flows for Molecular Ground-State Conformation Prediction Oct 13, 2024 Computational Efficiency Molecular Docking
— Unverified 0TapWeight: Reweighting Pretraining Objectives for Task-Adaptive Pretraining Oct 13, 2024 Molecular Property Prediction Natural Language Understanding
— Unverified 0Rethinking Gradient-Based Methods: Multi-Property Materials Design Beyond Differentiable Targets Oct 11, 2024 Band Gap Bayesian Optimization
Code Code Available 0Unveiling Molecular Secrets: An LLM-Augmented Linear Model for Explainable and Calibratable Molecular Property Prediction Oct 11, 2024 CPU Dimensionality Reduction
Code Code Available 0Molecular topological deep learning for polymer property prediction Oct 7, 2024 Deep Learning Prediction
— Unverified 0Scalable Multi-Task Transfer Learning for Molecular Property Prediction Oct 1, 2024 Molecular Property Prediction Prediction
— Unverified 0Task Addition in Multi-Task Learning by Geometrical Alignment Sep 25, 2024 Molecular Property Prediction Multi-Task Learning
— Unverified 0Quantum Machine Learning in Drug Discovery: Applications in Academia and Pharmaceutical Industries Sep 24, 2024 Drug Discovery Molecular Property Prediction
— Unverified 0Dumpling GNN: Hybrid GNN Enables Better ADC Payload Activity Prediction Based on Chemical Structure Sep 23, 2024 Activity Prediction Drug Discovery
— Unverified 0Evaluating the Performance and Robustness of LLMs in Materials Science Q&A and Property Predictions Sep 22, 2024 Band Gap In-Context Learning
— Unverified 0Smirk: An Atomically Complete Tokenizer for Molecular Foundation Models Sep 19, 2024 Diversity Molecular Property Prediction
— Unverified 0Molecular Graph Representation Learning via Structural Similarity Information Sep 13, 2024 Graph Representation Learning molecular representation
Code Code Available 0Regression with Large Language Models for Materials and Molecular Property Prediction Sep 9, 2024 Language Modeling Language Modelling
— Unverified 0Efficient Training of Transformers for Molecule Property Prediction on Small-scale Datasets Sep 7, 2024 Property Prediction
— Unverified 0CrysAtom: Distributed Representation of Atoms for Crystal Property Prediction Sep 7, 2024 Formation Energy Graph Neural Network
— Unverified 0Self-supervised learning for crystal property prediction via denoising Aug 30, 2024 Denoising Prediction
— Unverified 0Do Graph Neural Networks Work for High Entropy Alloys? Aug 29, 2024 Property Prediction
Code Code Available 0