MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-based Protein Structure Prediction May 10, 2016 General Classification image-classification
Code Code Available 05 Enhancing Molecular Property Prediction with Auxiliary Learning and Task-Specific Adaptation Jan 29, 2024 Auxiliary Learning Molecular Property Prediction
Code Code Available 05 Enhancing Molecular Property Prediction via Mixture of Collaborative Experts Dec 6, 2023 Decision Making Diversity
Code Code Available 05 Multimodal Model with Text and Drug Embeddings for Adverse Drug Reaction Classification Oct 21, 2022 Classification Molecular Property Prediction
Code Code Available 05 Adapting Differential Molecular Representation with Hierarchical Prompts for Multi-label Property Prediction May 29, 2024 Drug Discovery molecular representation
Code Code Available 05 Multipath Graph Convolutional Neural Networks May 4, 2021 Node Property Prediction Property Prediction
Code Code Available 05 Outlier-Based Domain of Applicability Identification for Materials Property Prediction Models Jan 17, 2023 Prediction Property Prediction
Code Code Available 05 MolXPT: Wrapping Molecules with Text for Generative Pre-training May 18, 2023 Language Modeling Language Modelling
Code Code Available 05 Motif-aware Attribute Masking for Molecular Graph Pre-training Sep 8, 2023 Attribute Decoder
Code Code Available 05 Embedding Graphs on Grassmann Manifold May 30, 2022 Graph Embedding Graph Property Prediction
Code Code Available 05 MolMetaLM: a Physicochemical Knowledge-Guided Molecular Meta Language Model Nov 23, 2024 Language Modeling Language Modelling
Code Code Available 05 Molecule Property Prediction Based on Spatial Graph Embedding Aug 22, 2019 Drug Discovery Graph Embedding
Code Code Available 05 Efficient Chemical Space Exploration Using Active Learning Based on Marginalized Graph Kernel: an Application for Predicting the Thermodynamic Properties of Alkanes with Molecular Simulation Sep 1, 2022 Active Learning GPR
Code Code Available 05 MolPLA: A Molecular Pretraining Framework for Learning Cores, R-Groups and their Linker Joints Jan 30, 2024 Contrastive Learning Molecular Property Prediction
Code Code Available 05 MT-CGCNN: Integrating Crystal Graph Convolutional Neural Network with Multitask Learning for Material Property Prediction Nov 14, 2018 Band Gap BIG-bench Machine Learning
Code Code Available 05 Efficient Approximations of Complete Interatomic Potentials for Crystal Property Prediction Jun 12, 2023 Band Gap Formation Energy
Code Code Available 05 MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis Jun 13, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 05 Molecular Representation Learning by Leveraging Chemical Information Mar 15, 2021 Drug Design Graph Property Prediction
Code Code Available 05 Molecular Property Prediction: A Multilevel Quantum Interactions Modeling Perspective Jun 25, 2019 Graph Neural Network Graph Regression
Code Code Available 05 Molecule Property Prediction and Classification with Graph Hypernetworks Feb 1, 2020 Classification Computational chemistry
Code Code Available 05 MUBen: Benchmarking the Uncertainty of Molecular Representation Models Jun 14, 2023 Benchmarking Drug Discovery
Code Code Available 05 Molecular geometric deep learning Jun 22, 2023 Deep Learning Molecular Property Prediction
Code Code Available 05 DScribe: Library of Descriptors for Machine Learning in Materials Science Apr 18, 2019 BIG-bench Machine Learning Formation Energy
Code Code Available 05 DR-Label: Improving GNN Models for Catalysis Systems by Label Deconstruction and Reconstruction Mar 6, 2023 Graph Neural Network Initial Structure to Relaxed Energy (IS2RE), Direct
Code Code Available 05 Molecular Graph Contrastive Learning with Line Graph Jan 15, 2025 Attribute Contrastive Learning
Code Code Available 05 MolCap-Arena: A Comprehensive Captioning Benchmark on Language-Enhanced Molecular Property Prediction Nov 1, 2024 Molecular Property Prediction Property Prediction
Code Code Available 05 BayesGrad: Explaining Predictions of Graph Convolutional Networks Jul 4, 2018 Property Prediction
Code Code Available 05 Domain-Adversarial Multi-Task Framework for Novel Therapeutic Property Prediction of Compounds Sep 28, 2018 Property Prediction
Code Code Available 05 Do Graph Neural Networks Work for High Entropy Alloys? Aug 29, 2024 Property Prediction
Code Code Available 05 BatmanNet: Bi-branch Masked Graph Transformer Autoencoder for Molecular Representation Nov 25, 2022 Drug Discovery Molecular Property Prediction
Code Code Available 05 Molecular Graph Representation Learning Integrating Large Language Models with Domain-specific Small Models Aug 19, 2024 Descriptive Drug Discovery
Code Code Available 05 Diverse Explanations From Data-Driven and Domain-Driven Perspectives in the Physical Sciences Feb 1, 2024 Diversity Explainable artificial intelligence
Code Code Available 05 MatMMFuse: Multi-Modal Fusion model for Material Property Prediction Apr 30, 2025 Band Gap Formation Energy
Code Code Available 05 Molecular Graph Representation Learning via Structural Similarity Information Sep 13, 2024 Graph Representation Learning molecular representation
Code Code Available 05 AugWard: Augmentation-Aware Representation Learning for Accurate Graph Classification Mar 27, 2025 Diversity Drug Discovery
Code Code Available 05 An Empirical Study of Retrieval-enhanced Graph Neural Networks Jun 1, 2022 Graph Neural Network Graph Property Prediction
Code Code Available 05 A Large Encoder-Decoder Family of Foundation Models For Chemical Language Jul 24, 2024 Decoder Few-Shot Learning
Code Code Available 05 DeeperGCN: All You Need to Train Deeper GCNs Jun 13, 2020 All Graph Learning
Code Code Available 05 Leveraging large language models for nano synthesis mechanism explanation: solid foundations or mere conjectures? Jul 12, 2024 Logical Reasoning Multiple-choice
Code Code Available 05 Deep-ELA: Deep Exploratory Landscape Analysis with Self-Supervised Pretrained Transformers for Single- and Multi-Objective Continuous Optimization Problems Jan 2, 2024 Property Prediction
Code Code Available 05 Graph-wise Common Latent Factor Extraction for Unsupervised Graph Representation Learning Dec 16, 2021 Graph Embedding Graph Generation
Code Code Available 05 DYMAG: Rethinking Message Passing Using Dynamical-systems-based Waveforms Sep 18, 2023 Graph Neural Network Property Prediction
Code Code Available 05 Data-Efficient Molecular Generation with Hierarchical Textual Inversion May 5, 2024 Drug Discovery Image Generation
Code Code Available 05 Data-Driven Self-Supervised Graph Representation Learning Dec 24, 2024 Data Augmentation Document Classification
Code Code Available 05 Learning Hierarchical Interaction for Accurate Molecular Property Prediction Apr 28, 2025 Drug Discovery Molecular Property Prediction
Code Code Available 05 Learning Multi-view Molecular Representations with Structured and Unstructured Knowledge Jun 14, 2024 Knowledge Graphs Molecular Property Prediction
Code Code Available 05 LiteGEM: Lite Geometry Enhanced Molecular Representation Learning for Quantum Property Prediction Jun 28, 2021 molecular representation Property Prediction
Code Code Available 05 Materials property prediction using symmetry-labeled graphs as atomic-position independent descriptors May 15, 2019 BIG-bench Machine Learning Formation Energy
Code Code Available 05 Knowledge-enhanced Relation Graph and Task Sampling for Few-shot Molecular Property Prediction May 24, 2024 Meta-Learning Molecular Property Prediction
Code Code Available 05 Graph Neural Networks for Surfactant Multi-Property Prediction Jan 3, 2024 Ensemble Learning Multi-Task Learning
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