On the Stability of Expressive Positional Encodings for Graphs Oct 4, 2023 Molecular Property Prediction Out-of-Distribution Generalization
Code Code Available 15 MD-HIT: Machine learning for materials property prediction with dataset redundancy control Jul 10, 2023 Property Prediction Protein Function Prediction
Code Code Available 15 A new perspective on building efficient and expressive 3D equivariant graph neural networks Apr 7, 2023 Graph Property Prediction Molecular Property Prediction
Code Code Available 15 Meta-Learning with Fewer Tasks through Task Interpolation Jun 4, 2021 image-classification Image Classification
Code Code Available 15 Improving Molecular Representation Learning with Metric Learning-enhanced Optimal Transport Feb 13, 2022 Domain Adaptation Metric Learning
Code Code Available 15 PeptideBERT: A Language Model based on Transformers for Peptide Property Prediction Aug 28, 2023 Language Modeling Language Modelling
Code Code Available 15 Publishing Neural Networks in Drug Discovery Might Compromise Training Data Privacy Oct 22, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 15 Molecular Contrastive Learning with Chemical Element Knowledge Graph Dec 1, 2021 Contrastive Learning Drug Design
Code Code Available 15 Contextualized Messages Boost Graph Representations Mar 19, 2024 Graph Property Prediction Property Prediction
Code Code Available 05 Conditional molecular design with deep generative models Apr 30, 2018 Property Prediction
Code Code Available 05 GEM-2: Next Generation Molecular Property Prediction Network by Modeling Full-range Many-body Interactions Aug 11, 2022 Computational chemistry Drug Discovery
Code Code Available 05 Complete and Efficient Graph Transformers for Crystal Material Property Prediction Mar 18, 2024 ADP Prediction Graph Representation Learning
Code Code Available 05 Multipath Graph Convolutional Neural Networks May 4, 2021 Node Property Prediction Property Prediction
Code Code Available 05 Multi-Peptide: Multimodality Leveraged Language-Graph Learning of Peptide Properties Jul 2, 2024 Graph Learning Property Prediction
Code Code Available 05 MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-based Protein Structure Prediction May 10, 2016 General Classification image-classification
Code Code Available 05 Object-Centric Learning with Slot Mixture Module Nov 8, 2023 Clustering Object
Code Code Available 05 MUBen: Benchmarking the Uncertainty of Molecular Representation Models Jun 14, 2023 Benchmarking Drug Discovery
Code Code Available 05 From Tokens to Materials: Leveraging Language Models for Scientific Discovery Oct 21, 2024 Language Modeling Language Modelling
Code Code Available 05 CoarsenConf: Equivariant Coarsening with Aggregated Attention for Molecular Conformer Generation Jun 26, 2023 Drug Discovery Property Prediction
Code Code Available 05 Coarse-Grained Configurational Polymer Fingerprints for Property Prediction using Machine Learning Nov 20, 2023 Property Prediction
Code Code Available 05 Multimodal machine learning with large language embedding model for polymer property prediction Mar 29, 2025 Property Prediction
Code Code Available 05 MolPLA: A Molecular Pretraining Framework for Learning Cores, R-Groups and their Linker Joints Jan 30, 2024 Contrastive Learning Molecular Property Prediction
Code Code Available 05 CLOUD: A Scalable and Physics-Informed Foundation Model for Crystal Representation Learning Jun 19, 2025 Property Prediction Representation Learning
Code Code Available 05 MolMetaLM: a Physicochemical Knowledge-Guided Molecular Meta Language Model Nov 23, 2024 Language Modeling Language Modelling
Code Code Available 05 MolXPT: Wrapping Molecules with Text for Generative Pre-training May 18, 2023 Language Modeling Language Modelling
Code Code Available 05 Formula graph self-attention network for representation-domain independent materials discovery Jan 14, 2022 Property Prediction
Code Code Available 05 Fluid Viscosity Prediction Leveraging Computer Vision and Robot Interaction Aug 4, 2023 Prediction Property Prediction
Code Code Available 05 CL-MFAP: A Contrastive Learning-Based Multimodal Foundation Model for Molecular Property Prediction and Antibiotic Screening Feb 16, 2025 Contrastive Learning Molecular Property Prediction
Code Code Available 05 Flexible dual-branched message passing neural network for quantum mechanical property prediction with molecular conformation Jun 14, 2021 Computational chemistry Molecular Property Prediction
Code Code Available 05 Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profiles Nov 22, 2019 Cross-Modal Information Retrieval Information Retrieval
Code Code Available 05 ApisTox: a new benchmark dataset for the classification of small molecules toxicity on honey bees Apr 24, 2024 Benchmarking Molecular Property Prediction
Code Code Available 05 Motif-aware Attribute Masking for Molecular Graph Pre-training Sep 8, 2023 Attribute Decoder
Code Code Available 05 From Abstract to Actionable: Pairwise Shapley Values for Explainable AI Feb 18, 2025 Drug Discovery Fairness
Code Code Available 05 Multimodal Model with Text and Drug Embeddings for Adverse Drug Reaction Classification Oct 21, 2022 Classification Molecular Property Prediction
Code Code Available 05 MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis Jun 13, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 05 Molecule Property Prediction and Classification with Graph Hypernetworks Feb 1, 2020 Classification Computational chemistry
Code Code Available 05 MT-CGCNN: Integrating Crystal Graph Convolutional Neural Network with Multitask Learning for Material Property Prediction Nov 14, 2018 Band Gap BIG-bench Machine Learning
Code Code Available 05 Explaining Graph Neural Networks with Large Language Models: A Counterfactual Perspective for Molecular Property Prediction Oct 19, 2024 counterfactual Counterfactual Explanation
Code Code Available 05 An open unified deep graph learning framework for discovering drug leads Dec 6, 2022 Benchmarking Drug Discovery
Code Code Available 05 Molecule Property Prediction Based on Spatial Graph Embedding Aug 22, 2019 Drug Discovery Graph Embedding
Code Code Available 05 Molecular Graph Representation Learning via Structural Similarity Information Sep 13, 2024 Graph Representation Learning molecular representation
Code Code Available 05 GCI: A (G)raph (C)oncept (I)nterpretation Framework Feb 9, 2023 Explainable Artificial Intelligence (XAI) Molecular Property Prediction
Code Code Available 05 Molecular Graph Representation Learning Integrating Large Language Models with Domain-specific Small Models Aug 19, 2024 Descriptive Drug Discovery
Code Code Available 05 Molecular Property Prediction: A Multilevel Quantum Interactions Modeling Perspective Jun 25, 2019 Graph Neural Network Graph Regression
Code Code Available 05 Molecular geometric deep learning Jun 22, 2023 Deep Learning Molecular Property Prediction
Code Code Available 05 Molecular Graph Contrastive Learning with Line Graph Jan 15, 2025 Attribute Contrastive Learning
Code Code Available 05 Molecular Representation Learning by Leveraging Chemical Information Mar 15, 2021 Drug Design Graph Property Prediction
Code Code Available 05 Establishing Deep InfoMax as an effective self-supervised learning methodology in materials informatics Jun 30, 2024 Band Gap Formation Energy
Code Code Available 05 Equivariant Parameter Sharing for Porous Crystalline Materials Apr 4, 2023 Property Prediction
Code Code Available 05 Equivariant Message Passing Neural Network for Crystal Material Discovery Feb 1, 2023 Property Prediction
Code Code Available 05