^2DFT: A Universal Quantum Chemistry Dataset of Drug-Like Molecules and a Benchmark for Neural Network Potentials Jun 20, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 35 DARWIN 1.5: Large Language Models as Materials Science Adapted Learners Dec 16, 2024 Large Language Model Multi-Task Learning
Code Code Available 35 TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery Feb 16, 2022 BIG-bench Machine Learning Drug Discovery
Code Code Available 35 Molecular Fingerprints Are Strong Models for Peptide Function Prediction Jan 29, 2025 Graph Classification Graph Regression
Code Code Available 35 A Python library for efficient computation of molecular fingerprints Mar 27, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 35 Highly Accurate Quantum Chemical Property Prediction with Uni-Mol+ Mar 16, 2023 Benchmarking Graph Regression
Code Code Available 35 A Review of Large Language Models and Autonomous Agents in Chemistry Jun 26, 2024 Property Prediction scientific discovery
Code Code Available 35 Scikit-fingerprints: easy and efficient computation of molecular fingerprints in Python Jul 18, 2024 Molecular Property Prediction Property Prediction
Code Code Available 35 Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey Mar 3, 2024 Property Prediction
Code Code Available 35 Uni-QSAR: an Auto-ML Tool for Molecular Property Prediction Apr 24, 2023 Drug Discovery Model Selection
Code Code Available 35 Improving Molecular Properties Prediction Through Latent Space Fusion Oct 20, 2023 Molecular Property Prediction Prediction
Code Code Available 25 A Text-guided Protein Design Framework Feb 9, 2023 Decoder Property Prediction
Code Code Available 25 Temporal Graph Benchmark for Machine Learning on Temporal Graphs Jul 3, 2023 Node Property Prediction Property Prediction
Code Code Available 25 A Systematic Survey of Chemical Pre-trained Models Oct 29, 2022 Drug Design molecular representation
Code Code Available 25 Analyzing Learned Molecular Representations for Property Prediction Apr 2, 2019 Molecular Property Prediction molecular representation
Code Code Available 25 Descriptor-based Foundation Models for Molecular Property Prediction Jun 18, 2025 Molecular Property Prediction Prediction
Code Code Available 25 Deconstructing equivariant representations in molecular systems Oct 10, 2024 Property Prediction
Code Code Available 25 CrystalFormer-RL: Reinforcement Fine-Tuning for Materials Design Apr 3, 2025 Band Gap Dielectric Constant
Code Code Available 25 Protein Representation Learning by Geometric Structure Pretraining Mar 11, 2022 Contrastive Learning Prediction
Code Code Available 25 ProtT3: Protein-to-Text Generation for Text-based Protein Understanding May 21, 2024 Property Prediction Question Answering
Code Code Available 25 SGFormer: Simplifying and Empowering Transformers for Large-Graph Representations Jun 19, 2023 Node Property Prediction Philosophy
Code Code Available 25 Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformers Feb 7, 2024 Drug Discovery Graph Learning
Code Code Available 25 Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models Jun 13, 2023 Catalytic activity prediction Chemical-Disease Interaction Extraction
Code Code Available 25 MHG-GNN: Combination of Molecular Hypergraph Grammar with Graph Neural Network Sep 28, 2023 Graph Neural Network Prediction
Code Code Available 25 Multi-Modal Representation Learning for Molecular Property Prediction: Sequence, Graph, Geometry Jan 7, 2024 Data Augmentation Drug Discovery
Code Code Available 25 Identity-aware Graph Neural Networks Jan 25, 2021 Graph Classification Graph Property Prediction
Code Code Available 25 Generative Artificial Intelligence for Navigating Synthesizable Chemical Space Oct 4, 2024 Drug Discovery Navigate
Code Code Available 25 Generalizable, Fast, and Accurate DeepQSPR with fastprop Apr 2, 2024 Molecular Property Prediction Property Prediction
Code Code Available 25 M^3-20M: A Large-Scale Multi-Modal Molecule Dataset for AI-driven Drug Design and Discovery Dec 8, 2024 Drug Design Molecular Property Prediction
Code Code Available 25 ADMET property prediction through combinations of molecular fingerprints Sep 29, 2023 Graph Neural Network Prediction
Code Code Available 15 Directed Graph Grammars for Sequence-based Learning May 29, 2025 Bayesian Optimization Graph Generation
Code Code Available 15 Dual-view Molecule Pre-training Jun 17, 2021 Molecular Property Prediction Property Prediction
Code Code Available 15 CHILI: Chemically-Informed Large-scale Inorganic Nanomaterials Dataset for Advancing Graph Machine Learning Feb 20, 2024 Atomic number classification Benchmarking
Code Code Available 15 ChiENN: Embracing Molecular Chirality with Graph Neural Networks Jul 5, 2023 Drug Discovery Molecular Property Prediction
Code Code Available 15 DGL-LifeSci: An Open-Source Toolkit for Deep Learning on Graphs in Life Science Jun 27, 2021 Deep Learning Molecular Property Prediction
Code Code Available 15 Dynamic In-context Learning with Conversational Models for Data Extraction and Materials Property Prediction May 16, 2024 In-Context Learning Property Prediction
Code Code Available 15 ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Prediction Oct 19, 2020 Molecular Property Prediction molecular representation
Code Code Available 15 3D-MolT5: Leveraging Discrete Structural Information for Molecule-Text Modeling Jun 9, 2024 Molecular Property Prediction Molecule Captioning
Code Code Available 15 Chemical-Reaction-Aware Molecule Representation Learning Sep 21, 2021 Chemical Reaction Prediction Property Prediction
Code Code Available 15 Can Large Language Models Understand Molecules? Jan 5, 2024 Drug Discovery Language Modelling
Code Code Available 15 Bayesian Graph Neural Networks for Molecular Property Prediction Nov 25, 2020 Molecular Property Prediction Prediction
Code Code Available 15 ChemLLM: A Chemical Large Language Model Feb 10, 2024 Language Modeling Language Modelling
Code Code Available 15 DenseGNN: universal and scalable deeper graph neural networks for high-performance property prediction in crystals and molecules Jan 5, 2025 Domain Adaptation Property Prediction
Code Code Available 15 E(n) Equivariant Topological Neural Networks May 24, 2024 Inductive Bias Molecular Property Prediction
Code Code Available 15 An algorithmic framework for synthetic cost-aware decision making in molecular design Nov 3, 2023 Decision Making Property Prediction
Code Code Available 15 Automated 3D Pre-Training for Molecular Property Prediction Jun 13, 2023 Drug Discovery Graph Learning
Code Code Available 15 A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language Sep 12, 2022 Contrastive Learning Cross-Modal Retrieval
Code Code Available 15 Can Large Language Models Empower Molecular Property Prediction? Jul 14, 2023 Molecular Property Prediction Prediction
Code Code Available 15 CACTUS: Chemistry Agent Connecting Tool-Usage to Science May 2, 2024 Molecular Property Prediction Prompt Engineering
Code Code Available 15 AugLiChem: Data Augmentation Library of Chemical Structures for Machine Learning Nov 30, 2021 BIG-bench Machine Learning Data Augmentation
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