A Review of Large Language Models and Autonomous Agents in Chemistry Jun 26, 2024 Property Prediction scientific discovery
Code Code Available 3Highly Accurate Quantum Chemical Property Prediction with Uni-Mol+ Mar 16, 2023 Benchmarking Graph Regression
Code Code Available 3DARWIN 1.5: Large Language Models as Materials Science Adapted Learners Dec 16, 2024 Large Language Model Multi-Task Learning
Code Code Available 3Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey Mar 3, 2024 Property Prediction
Code Code Available 3A Python library for efficient computation of molecular fingerprints Mar 27, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 3TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery Feb 16, 2022 BIG-bench Machine Learning Drug Discovery
Code Code Available 3Molecular Fingerprints Are Strong Models for Peptide Function Prediction Jan 29, 2025 Graph Classification Graph Regression
Code Code Available 3Scikit-fingerprints: easy and efficient computation of molecular fingerprints in Python Jul 18, 2024 Molecular Property Prediction Property Prediction
Code Code Available 3^2DFT: A Universal Quantum Chemistry Dataset of Drug-Like Molecules and a Benchmark for Neural Network Potentials Jun 20, 2024 Drug Discovery Molecular Property Prediction
Code Code Available 3Uni-QSAR: an Auto-ML Tool for Molecular Property Prediction Apr 24, 2023 Drug Discovery Model Selection
Code Code Available 3Descriptor-based Foundation Models for Molecular Property Prediction Jun 18, 2025 Molecular Property Prediction Prediction
Code Code Available 2M^3-20M: A Large-Scale Multi-Modal Molecule Dataset for AI-driven Drug Design and Discovery Dec 8, 2024 Drug Design Molecular Property Prediction
Code Code Available 2ProtT3: Protein-to-Text Generation for Text-based Protein Understanding May 21, 2024 Property Prediction Question Answering
Code Code Available 2A Systematic Survey of Chemical Pre-trained Models Oct 29, 2022 Drug Design molecular representation
Code Code Available 2Triplet Interaction Improves Graph Transformers: Accurate Molecular Graph Learning with Triplet Graph Transformers Feb 7, 2024 Drug Discovery Graph Learning
Code Code Available 2Protein Representation Learning by Geometric Structure Pretraining Mar 11, 2022 Contrastive Learning Prediction
Code Code Available 2Temporal Graph Benchmark for Machine Learning on Temporal Graphs Jul 3, 2023 Node Property Prediction Property Prediction
Code Code Available 2MHG-GNN: Combination of Molecular Hypergraph Grammar with Graph Neural Network Sep 28, 2023 Graph Neural Network Prediction
Code Code Available 2Multi-Modal Representation Learning for Molecular Property Prediction: Sequence, Graph, Geometry Jan 7, 2024 Data Augmentation Drug Discovery
Code Code Available 2SGFormer: Simplifying and Empowering Transformers for Large-Graph Representations Jun 19, 2023 Node Property Prediction Philosophy
Code Code Available 2Improving Molecular Properties Prediction Through Latent Space Fusion Oct 20, 2023 Molecular Property Prediction Prediction
Code Code Available 2CrystalFormer-RL: Reinforcement Fine-Tuning for Materials Design Apr 3, 2025 Band Gap Dielectric Constant
Code Code Available 2A Text-guided Protein Design Framework Feb 9, 2023 Decoder Property Prediction
Code Code Available 2Analyzing Learned Molecular Representations for Property Prediction Apr 2, 2019 Molecular Property Prediction molecular representation
Code Code Available 2Deconstructing equivariant representations in molecular systems Oct 10, 2024 Property Prediction
Code Code Available 2Generalizable, Fast, and Accurate DeepQSPR with fastprop Apr 2, 2024 Molecular Property Prediction Property Prediction
Code Code Available 2Generative Artificial Intelligence for Navigating Synthesizable Chemical Space Oct 4, 2024 Drug Discovery Navigate
Code Code Available 2Identity-aware Graph Neural Networks Jan 25, 2021 Graph Classification Graph Property Prediction
Code Code Available 2Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models Jun 13, 2023 Catalytic activity prediction Chemical-Disease Interaction Extraction
Code Code Available 2ADMET property prediction through combinations of molecular fingerprints Sep 29, 2023 Graph Neural Network Prediction
Code Code Available 1Directed Graph Grammars for Sequence-based Learning May 29, 2025 Bayesian Optimization Graph Generation
Code Code Available 1Dual-view Molecule Pre-training Jun 17, 2021 Molecular Property Prediction Property Prediction
Code Code Available 1DenseGNN: universal and scalable deeper graph neural networks for high-performance property prediction in crystals and molecules Jan 5, 2025 Domain Adaptation Property Prediction
Code Code Available 1DGL-LifeSci: An Open-Source Toolkit for Deep Learning on Graphs in Life Science Jun 27, 2021 Deep Learning Molecular Property Prediction
Code Code Available 1Dynamic In-context Learning with Conversational Models for Data Extraction and Materials Property Prediction May 16, 2024 In-Context Learning Property Prediction
Code Code Available 1Data-Centric Learning from Unlabeled Graphs with Diffusion Model Mar 17, 2023 Denoising Graph Property Prediction
Code Code Available 13D-MolT5: Leveraging Discrete Structural Information for Molecule-Text Modeling Jun 9, 2024 Molecular Property Prediction Molecule Captioning
Code Code Available 1CrysMMNet: Multimodal Representation for Crystal Property Prediction Jun 9, 2023 Prediction Property Prediction
Code Code Available 1Any-Property-Conditional Molecule Generation with Self-Criticism using Spanning Trees Jul 12, 2024 Graph Generation Property Prediction
Code Code Available 1CrysGNN : Distilling pre-trained knowledge to enhance property prediction for crystalline materials Jan 14, 2023 Formation Energy Graph Neural Network
Code Code Available 1Deep learning-based denoising for fast time-resolved flame emission spectroscopy in high-pressure combustion environment Jul 29, 2022 Denoising Property Prediction
Code Code Available 1E(n) Equivariant Topological Neural Networks May 24, 2024 Inductive Bias Molecular Property Prediction
Code Code Available 1An algorithmic framework for synthetic cost-aware decision making in molecular design Nov 3, 2023 Decision Making Property Prediction
Code Code Available 1ChiENN: Embracing Molecular Chirality with Graph Neural Networks Jul 5, 2023 Drug Discovery Molecular Property Prediction
Code Code Available 1CHILI: Chemically-Informed Large-scale Inorganic Nanomaterials Dataset for Advancing Graph Machine Learning Feb 20, 2024 Atomic number classification Benchmarking
Code Code Available 1A Molecular Multimodal Foundation Model Associating Molecule Graphs with Natural Language Sep 12, 2022 Contrastive Learning Cross-Modal Retrieval
Code Code Available 1Chemical-Reaction-Aware Molecule Representation Learning Sep 21, 2021 Chemical Reaction Prediction Property Prediction
Code Code Available 1Copolymer Informatics with Multi-Task Deep Neural Networks Mar 25, 2021 Meta-Learning Multi-Task Learning
Code Code Available 1ChemLLM: A Chemical Large Language Model Feb 10, 2024 Language Modeling Language Modelling
Code Code Available 1Can Large Language Models Understand Molecules? Jan 5, 2024 Drug Discovery Language Modelling
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