| A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform | Mar 6, 2014 | ClusteringMultiple Sequence Alignment | —Unverified | 0 | 0 |
| Application of Sequence Embedding in Protein Sequence-Based Predictions | Oct 14, 2021 | Multiple Sequence AlignmentPosition | —Unverified | 0 | 0 |
| Boltzmann machine learning and regularization methods for inferring evolutionary fields and couplings from a multiple sequence alignment | Sep 10, 2019 | BIG-bench Machine LearningMultiple Sequence Alignment | —Unverified | 0 | 0 |
| ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions | Jun 26, 2024 | Graph Neural NetworkMultiple Sequence Alignment | —Unverified | 0 | 0 |
| CVTree for 16S rRNA: Constructing Taxonomy-Compatible All-Species Living Tree Effectively and Efficiently | May 12, 2025 | AllMultiple Sequence Alignment | —Unverified | 0 | 0 |
| Deep Time Warping for Multiple Time Series Alignment | Feb 22, 2025 | Dynamic Time WarpingMultiple Sequence Alignment | —Unverified | 0 | 0 |
| Dynamic Programming Algorithms for Discovery of Antibiotic Resistance in Microbial Genomes | Nov 29, 2023 | Multiple Sequence Alignment | —Unverified | 0 | 0 |
| Efficient Inference in Phylogenetic InDel Trees | Dec 1, 2008 | Multiple Sequence Alignment | —Unverified | 0 | 0 |
| Few Shot Protein Generation | Apr 3, 2022 | Multiple Sequence Alignment | —Unverified | 0 | 0 |
| Full Reconstruction of Non-Stationary Strand-Symmetric Models on Rooted Phylogenies | Nov 13, 2016 | Multiple Sequence Alignment | —Unverified | 0 | 0 |
