| State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences | May 30, 2025 | Multiple Sequence Alignment | —Unverified | 0 |
| Statistically-Consistent k-mer Methods for Phylogenetic Tree Reconstruction | Jan 14, 2016 | Multiple Sequence Alignment | —Unverified | 0 |
| Neural Time Warping For Multiple Sequence Alignment | Jun 29, 2020 | Multiple Sequence AlignmentTime Series | —Unverified | 0 |
| Pairwise heuristic sequence alignment algorithm based on deep reinforcement learning | Oct 26, 2020 | Deep Reinforcement LearningMultiple Sequence Alignment | —Unverified | 0 |
| Pairwise sequence alignment at arbitrarily large evolutionary distance | Jul 25, 2022 | Multiple Sequence Alignment | —Unverified | 0 |
| PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists | Dec 12, 2021 | EpidemiologyMultiple Sequence Alignment | —Unverified | 0 |
| MNHN-Tree-Tools: a toolbox for tree inference using multi-scale clustering of a set of sequences | Jun 8, 2021 | Multiple Sequence Alignment | CodeCode Available | 0 |
| Phylogenetic automata, pruning, and multiple alignment | Mar 22, 2011 | Multiple Sequence Alignment | CodeCode Available | 0 |
| Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural network | Aug 30, 2017 | Multiple Sequence Alignment | CodeCode Available | 0 |
| DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein Sequences | Nov 21, 2020 | Decision MakingMultiple Sequence Alignment | CodeCode Available | 0 |
