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Multiple Sequence Alignment

Papers

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Showing 26–50 of 54 papers

TitleStatusHype
Advanced Deep Learning Methods for Protein Structure Prediction and Design—0
Aligning 415 519 proteins in less than two hours on PC—0
Aligning Speakers: Evaluating and Visualizing Text-based Diarization Using Efficient Multiple Sequence Alignment (Extended Version)—0
A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform—0
Application of Sequence Embedding in Protein Sequence-Based Predictions—0
Boltzmann machine learning and regularization methods for inferring evolutionary fields and couplings from a multiple sequence alignment—0
ContactNet: Geometric-Based Deep Learning Model for Predicting Protein-Protein Interactions—0
CVTree for 16S rRNA: Constructing Taxonomy-Compatible All-Species Living Tree Effectively and Efficiently—0
Deep Time Warping for Multiple Time Series Alignment—0
PenSLR: Persian end-to-end Sign Language Recognition Using Ensembling—0
Predicting diverse M-best protein contact maps—0
Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model—0
Riemannian Time Warping: Multiple Sequence Alignment in Curved Spaces—0
Seq-SetNet: Exploring Sequence Sets for Inferring Structures—0
Small Coupling Expansion for Multiple Sequence Alignment—0
State-aware protein-ligand complex prediction using AlphaFold3 with purified sequences—0
Statistically-Consistent k-mer Methods for Phylogenetic Tree Reconstruction—0
Neural Time Warping For Multiple Sequence Alignment—0
Pairwise heuristic sequence alignment algorithm based on deep reinforcement learning—0
Pairwise sequence alignment at arbitrarily large evolutionary distance—0
PEACH Tree: A Multiple Sequence Alignment and Tree Display Tool for Epidemiologists—0
MNHN-Tree-Tools: a toolbox for tree inference using multi-scale clustering of a set of sequencesCode0
Phylogenetic automata, pruning, and multiple alignmentCode0
Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural networkCode0
DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein SequencesCode0
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All datasetsBAliBASE v3OXBenchSABMark v1.65

Benchmark Results

#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score65.47—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score82.52—Unverified
#ModelMetricClaimedVerifiedStatus
1dlpalign_cnn_bilstmTotal Column Score42.59—Unverified