| Ultra-large alignments using Phylogeny-aware Profiles | Apr 5, 2015 | BIG-bench Machine LearningMultiple Sequence Alignment | CodeCode Available | 0 | 5 |
| Phylogenetic automata, pruning, and multiple alignment | Mar 22, 2011 | Multiple Sequence Alignment | CodeCode Available | 0 | 5 |
| QuickProbs 2: towards rapid construction of high-quality alignments of large protein families | Aug 30, 2016 | Multiple Sequence Alignment | CodeCode Available | 0 | 5 |
| DLPAlign: A Deep Learning based Progressive Alignment Method for Multiple Protein Sequences | Nov 21, 2020 | Decision MakingMultiple Sequence Alignment | CodeCode Available | 0 | 5 |
| Convolutional ProteinUnetLM competitive with long short-term memory-based protein secondary structure predictors | Nov 30, 2022 | Multiple Sequence AlignmentPrediction | CodeCode Available | 0 | 5 |
| Optimizing scoring function of dynamic programming of pairwise profile alignment using derivative free neural network | Aug 30, 2017 | Multiple Sequence Alignment | CodeCode Available | 0 | 5 |
| ESM-NBR: fast and accurate nucleic acid-binding residue prediction via protein language model feature representation and multi-task learning | Dec 1, 2023 | Language ModelingLanguage Modelling | CodeCode Available | 0 | 5 |
| MNHN-Tree-Tools: a toolbox for tree inference using multi-scale clustering of a set of sequences | Jun 8, 2021 | Multiple Sequence Alignment | CodeCode Available | 0 | 5 |
| Dynamic Programming Algorithms for Discovery of Antibiotic Resistance in Microbial Genomes | Nov 29, 2023 | Multiple Sequence Alignment | —Unverified | 0 | 0 |
| Deep Time Warping for Multiple Time Series Alignment | Feb 22, 2025 | Dynamic Time WarpingMultiple Sequence Alignment | —Unverified | 0 | 0 |
