| Conformation-Guided Molecular Representation with Hamiltonian Neural Networks | Jan 1, 2021 | 3D geometrymolecular representation | —Unverified | 0 |
| Deep Molecular Representation Learning via Fusing Physical and Chemical Information | Nov 28, 2021 | molecular representationRepresentation Learning | —Unverified | 0 |
| Directed Graph Attention Neural Network Utilizing 3D Coordinates for Molecular Property Prediction | Dec 1, 2020 | Graph AttentionMolecular Property Prediction | —Unverified | 0 |
| Does GNN Pretraining Help Molecular Representation? | Jul 13, 2022 | Drug Discoverymolecular representation | —Unverified | 0 |
| DrugLLM: Open Large Language Model for Few-shot Molecule Generation | May 7, 2024 | Drug DesignDrug Discovery | —Unverified | 0 |
| E3STO: Orbital Inspired SE(3)-Equivariant Molecular Representation for Electron Density Prediction | Oct 8, 2024 | molecular representationPrediction | —Unverified | 0 |
| An Equivariant Pretrained Transformer for Unified 3D Molecular Representation Learning | Feb 20, 2024 | DenoisingDrug Discovery | —Unverified | 0 |
| Evaluating the roughness of structure-property relationships using pretrained molecular representations | May 14, 2023 | molecular representationProperty Prediction | —Unverified | 0 |
| Explainable Molecular Property Prediction: Aligning Chemical Concepts with Predictions via Language Models | May 25, 2024 | Drug DiscoveryMolecular Property Prediction | —Unverified | 0 |
| FARM: Functional Group-Aware Representations for Small Molecules | Oct 2, 2024 | Contrastive LearningDrug Discovery | —Unverified | 0 |
| FineMolTex: Towards Fine-grained Molecular Graph-Text Pre-training | Sep 21, 2024 | Drug Discoverymolecular representation | —Unverified | 0 |
| FragmentNet: Adaptive Graph Fragmentation for Graph-to-Sequence Molecular Representation Learning | Feb 3, 2025 | Graph-to-SequenceMolecular Property Prediction | —Unverified | 0 |
| Generative Models for Automatic Chemical Design | Jul 2, 2019 | molecular representation | —Unverified | 0 |
| GenMol: A Drug Discovery Generalist with Discrete Diffusion | Jan 10, 2025 | Computational EfficiencyDrug Discovery | —Unverified | 0 |
| Geometry-aware Line Graph Transformer Pre-training for Molecular Property Prediction | Sep 1, 2023 | 3D geometryMolecular Property Prediction | —Unverified | 0 |
| GeoRecon: Graph-Level Representation Learning for 3D Molecules via Reconstruction-Based Pretraining | Jun 16, 2025 | DenoisingLanguage Modeling | —Unverified | 0 |
| Bi-level Contrastive Learning for Knowledge-Enhanced Molecule Representations | Jun 2, 2023 | Contrastive LearningKnowledge Graphs | —Unverified | 0 |
| Graph Multi-Similarity Learning for Molecular Property Prediction | Jan 31, 2024 | AttributeContrastive Learning | —Unverified | 0 |
| GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules | Jan 12, 2022 | Graph Representation Learningmolecular representation | —Unverified | 0 |
| HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations | Mar 27, 2023 | Molecular DockingMolecular Property Prediction | —Unverified | 0 |
| HiGraphDTI: Hierarchical Graph Representation Learning for Drug-Target Interaction Prediction | Apr 16, 2024 | Graph Representation Learningmolecular representation | —Unverified | 0 |
| Hyperbolic Molecular Representation Learning for Drug Repositioning | Jul 6, 2022 | molecular representationRepresentation Learning | —Unverified | 0 |
| Image-Like Graph Representations for Improved Molecular Property Prediction | Nov 20, 2021 | Graph Neural NetworkMolecular Property Prediction | —Unverified | 0 |
| Improving Performance Prediction of Electrolyte Formulations with Transformer-based Molecular Representation Model | Jun 28, 2024 | molecular representationProperty Prediction | —Unverified | 0 |
| Integrating Chemical Language and Molecular Graph in Multimodal Fused Deep Learning for Drug Property Prediction | Dec 29, 2023 | Deep LearningDrug Discovery | —Unverified | 0 |