| Knowledge-aware contrastive heterogeneous molecular graph learning | Feb 17, 2025 | BenchmarkingContrastive Learning | —Unverified | 0 |
| Knowledge-aware Contrastive Molecular Graph Learning | Mar 24, 2021 | Contrastive LearningDrug Discovery | —Unverified | 0 |
| Knowledge graph-enhanced molecular contrastive learning with functional prompt | May 4, 2023 | Contrastive LearningDrug Design | —Unverified | 0 |
| Learning multi-scale functional representations of proteins from single-cell microscopy data | May 24, 2022 | molecular representationRepresentation Learning | —Unverified | 0 |
| Generation of 3D Molecules in Pockets via Language Model | May 17, 2023 | 3D Molecule GenerationDrug Design | —Unverified | 0 |
| Mayer-homology learning prediction of protein-ligand binding affinities | Aug 23, 2024 | DescriptiveDrug Design | —Unverified | 0 |
| May the Force be with You: Unified Force-Centric Pre-Training for 3D Molecular Conformations | Aug 24, 2023 | Atomic ForcesDenoising | —Unverified | 0 |
| Meta-QSAR: a large-scale application of meta-learning to drug design and discovery | Sep 12, 2017 | BIG-bench Machine LearningDrug Design | —Unverified | 0 |
| Multilingual Molecular Representation Learning via Contrastive Pre-training | Sep 18, 2021 | Contrastive LearningLanguage Modeling | —Unverified | 0 |
| MolCAP: Molecular Chemical reActivity pretraining and prompted-finetuning enhanced molecular representation learning | Jun 13, 2023 | DiversityDrug Discovery | —Unverified | 0 |
| MolCPT: Molecule Continuous Prompt Tuning to Generalize Molecular Representation Learning | Dec 20, 2022 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| Molecular design method based on novel molecular representation and variational auto-encoder | Feb 20, 2023 | molecular representation | —Unverified | 0 |
| Molecular Joint Representation Learning via Multi-modal Information | Nov 25, 2022 | Drug DiscoveryGraph Neural Network | —Unverified | 0 |
| Molecular Property Prediction by Semantic-invariant Contrastive Learning | Mar 13, 2023 | Contrastive LearningDrug Design | —Unverified | 0 |
| MolGraph-xLSTM: A graph-based dual-level xLSTM framework with multi-head mixture-of-experts for enhanced molecular representation and interpretability | Jan 30, 2025 | Drug DiscoveryMixture-of-Experts | —Unverified | 0 |
| MultiModal-Learning for Predicting Molecular Properties: A Framework Based on Image and Graph Structures | Nov 28, 2023 | Drug DiscoveryGraph Neural Network | —Unverified | 0 |
| Multi-Modal Molecular Representation Learning via Structure Awareness | May 9, 2025 | Drug Discoverymolecular representation | —Unverified | 0 |
| Neural networks and kernel ridge regression for excited states dynamics of CH_2NH_2^+: From single-state to multi-state representations and multi-property machine learning models | Dec 18, 2019 | BIG-bench Machine Learningmolecular representation | —Unverified | 0 |
| Persistent Dirac for molecular representation | Feb 5, 2023 | Drug Designmolecular representation | —Unverified | 0 |
| PointGAT: A quantum chemical property prediction model integrating graph attention and 3D geometry | Oct 8, 2023 | 3D geometryComputational chemistry | —Unverified | 0 |
| Pre-training Transformers for Molecular Property Prediction Using Reaction Prediction | Jul 6, 2022 | Drug DiscoveryMolecular Property Prediction | —Unverified | 0 |
| Pure Component Property Estimation Framework Using Explainable Machine Learning Methods | May 14, 2025 | molecular representationProperty Prediction | —Unverified | 0 |
| Reprogramming Language Models for Molecular Representation Learning | Dec 7, 2020 | Dictionary LearningDomain Adaptation | —Unverified | 0 |
| SMI-Editor: Edit-based SMILES Language Model with Fragment-level Supervision | Dec 7, 2024 | Language ModelingLanguage Modelling | —Unverified | 0 |
| Representation of Molecules via Algebraic Data Types : Advancing Beyond SMILES & SELFIES | Jan 23, 2025 | molecular representationProbabilistic Programming | —Unverified | 0 |
| Smirk: An Atomically Complete Tokenizer for Molecular Foundation Models | Sep 19, 2024 | DiversityMolecular Property Prediction | —Unverified | 0 |
| Step Change Improvement in ADMET Prediction with PotentialNet Deep Featurization | Mar 28, 2019 | molecular representation | —Unverified | 0 |
| Revealing the Relationship Between Publication Bias and Chemical Reactivity with Contrastive Learning | Feb 19, 2024 | Contrastive Learningmolecular representation | —Unverified | 0 |
| GNN-SKAN: Harnessing the Power of SwallowKAN to Advance Molecular Representation Learning with GNNs | Aug 2, 2024 | Computational EfficiencyDrug Design | —Unverified | 0 |
| Synergistic Fusion of Graph and Transformer Features for Enhanced Molecular Property Prediction | Aug 25, 2023 | Drug DiscoveryMolecular Property Prediction | —Unverified | 0 |
| Technical report: Improving the properties of molecules generated by LIMO | Jul 20, 2024 | Decodermolecular representation | —Unverified | 0 |
| GlycoNMR: Dataset and benchmarks for NMR chemical shift prediction of carbohydrates with graph neural networks | Nov 28, 2023 | Drug Designmolecular representation | —Unverified | 0 |
| Tokenizing 3D Molecule Structure with Quantized Spherical Coordinates | Dec 2, 2024 | molecular representationProperty Prediction | —Unverified | 0 |
| Towards Interpretable Sparse Graph Representation Learning with Laplacian Pooling | May 28, 2019 | Drug DesignDrug Discovery | —Unverified | 0 |
| TRIDENT: Tri-Modal Molecular Representation Learning with Taxonomic Annotations and Local Correspondence | Jun 26, 2025 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| UniCorn: A Unified Contrastive Learning Approach for Multi-view Molecular Representation Learning | May 15, 2024 | Contrastive LearningDenoising | —Unverified | 0 |
| Multimodal Molecular Pretraining via Modality Blending | Jul 12, 2023 | Drug Discoverymolecular representation | —Unverified | 0 |
| Synergistic Benefits of Joint Molecule Generation and Property Prediction | Apr 23, 2025 | Drug Designmolecular representation | —Unverified | 0 |
| PACIA: Parameter-Efficient Adapter for Few-Shot Molecular Property Prediction | Oct 1, 2023 | Few-Shot LearningGraph Neural Network | CodeCode Available | 0 |
| Uni-Mol: A Universal 3D Molecular Representation Learning Framework | Sep 8, 2022 | 3D geometry3D Geometry Prediction | CodeCode Available | 0 |
| 2DNMRGym: An Annotated Experimental Dataset for Atom-Level Molecular Representation Learning in 2D NMR via Surrogate Supervision | May 16, 2025 | molecular representationRepresentation Learning | CodeCode Available | 0 |
| Active Learning of Molecular Data for Task-Specific Objectives | Aug 20, 2024 | Active LearningGaussian Processes | CodeCode Available | 0 |
| HamNet: Conformation-Guided Molecular Representation with Hamiltonian Neural Networks | May 8, 2021 | 3D geometrymolecular representation | CodeCode Available | 0 |
| Contextual Molecule Representation Learning from Chemical Reaction Knowledge | Feb 21, 2024 | molecular representationRepresentation Learning | CodeCode Available | 0 |
| GeoT: A Geometry-aware Transformer for Reliable Molecular Property Prediction and Chemically Interpretable Representation Learning | Jun 29, 2021 | Molecular Property Predictionmolecular representation | CodeCode Available | 0 |
| MolMix: A Simple Yet Effective Baseline for Multimodal Molecular Representation Learning | Oct 10, 2024 | molecular representationRepresentation Learning | CodeCode Available | 0 |
| MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis | Jun 13, 2024 | Drug DiscoveryMolecular Property Prediction | CodeCode Available | 0 |
| MotifPiece: A Data-Driven Approach for Effective Motif Extraction and Molecular Representation Learning | Dec 24, 2023 | molecular representationRepresentation Learning | CodeCode Available | 0 |
| MUBen: Benchmarking the Uncertainty of Molecular Representation Models | Jun 14, 2023 | BenchmarkingDrug Discovery | CodeCode Available | 0 |
| Chemical Language Model Linker: blending text and molecules with modular adapters | Oct 26, 2024 | Language ModelingLanguage Modelling | CodeCode Available | 0 |