| Self-Referencing Embedded Strings (SELFIES): A 100% robust molecular string representation | May 31, 2019 | molecular representationvalid | CodeCode Available | 1 |
| GDiffRetro: Retrosynthesis Prediction with Dual Graph Enhanced Molecular Representation and Diffusion Generation | Jan 14, 2025 | molecular representationRetrosynthesis | CodeCode Available | 1 |
| ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Prediction | Oct 19, 2020 | Molecular Property Predictionmolecular representation | CodeCode Available | 1 |
| MOL-Mamba: Enhancing Molecular Representation with Structural & Electronic Insights | Dec 21, 2024 | Drug DesignMamba | CodeCode Available | 1 |
| InstructBio: A Large-scale Semi-supervised Learning Paradigm for Biochemical Problems | Apr 8, 2023 | molecular representationRepresentation Learning | CodeCode Available | 1 |
| Improving Molecular Representation Learning with Metric Learning-enhanced Optimal Transport | Feb 13, 2022 | Domain AdaptationMetric Learning | CodeCode Available | 1 |
| GeoMFormer: A General Architecture for Geometric Molecular Representation Learning | Jun 24, 2024 | molecular representationRepresentation Learning | CodeCode Available | 1 |
| Bi-level Contrastive Learning for Knowledge-Enhanced Molecule Representations | Jun 2, 2023 | Contrastive LearningKnowledge Graphs | —Unverified | 0 |
| GeoRecon: Graph-Level Representation Learning for 3D Molecules via Reconstruction-Based Pretraining | Jun 16, 2025 | DenoisingLanguage Modeling | —Unverified | 0 |
| Advancing Molecular Machine Learning Representations with Stereoelectronics-Infused Molecular Graphs | Aug 8, 2024 | Graph Neural NetworkMolecular Property Prediction | —Unverified | 0 |
| ChemRL-GEM: Geometry Enhanced Molecular Representation Learning for Property Prediction | Jun 11, 2021 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| AdaMR: Adaptable Molecular Representation for Unified Pre-training Strategy | Dec 28, 2023 | AttributeMolecular Property Prediction | —Unverified | 0 |
| Geometry-aware Line Graph Transformer Pre-training for Molecular Property Prediction | Sep 1, 2023 | 3D geometryMolecular Property Prediction | —Unverified | 0 |
| A 3D-Shape Similarity-based Contrastive Approach to Molecular Representation Learning | Nov 3, 2022 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 |
| Learning multi-scale functional representations of proteins from single-cell microscopy data | May 24, 2022 | molecular representationRepresentation Learning | —Unverified | 0 |
| GenMol: A Drug Discovery Generalist with Discrete Diffusion | Jan 10, 2025 | Computational EfficiencyDrug Discovery | —Unverified | 0 |
| Generative Models for Automatic Chemical Design | Jul 2, 2019 | molecular representation | —Unverified | 0 |
| Can Molecular Evolution Mechanism Enhance Molecular Representation? | Jan 27, 2025 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| AdaptMol: Adaptive Fusion from Sequence String to Topological Structure for Few-shot Drug Discovery | May 17, 2025 | Drug DiscoveryFew-Shot Learning | —Unverified | 0 |
| FragmentNet: Adaptive Graph Fragmentation for Graph-to-Sequence Molecular Representation Learning | Feb 3, 2025 | Graph-to-SequenceMolecular Property Prediction | —Unverified | 0 |
| BOOM: Benchmarking Out-Of-distribution Molecular Property Predictions of Machine Learning Models | May 3, 2025 | BenchmarkingHyperparameter Optimization | —Unverified | 0 |
| 3D-Mol: A Novel Contrastive Learning Framework for Molecular Property Prediction with 3D Information | Sep 28, 2023 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 |
| 3D Denoisers are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal Distillation | Sep 8, 2023 | DenoisingKnowledge Distillation | —Unverified | 0 |
| FineMolTex: Towards Fine-grained Molecular Graph-Text Pre-training | Sep 21, 2024 | Drug Discoverymolecular representation | —Unverified | 0 |
| GNN-SKAN: Harnessing the Power of SwallowKAN to Advance Molecular Representation Learning with GNNs | Aug 2, 2024 | Computational EfficiencyDrug Design | —Unverified | 0 |