| GeoMFormer: A General Architecture for Geometric Molecular Representation Learning | Jun 24, 2024 | molecular representationRepresentation Learning | CodeCode Available | 1 | 5 |
| MolSets: Molecular Graph Deep Sets Learning for Mixture Property Modeling | Dec 27, 2023 | Graph Neural Networkmixture property prediction | CodeCode Available | 1 | 5 |
| MolSpectra: Pre-training 3D Molecular Representation with Multi-modal Energy Spectra | Feb 22, 2025 | molecular representation | CodeCode Available | 1 | 5 |
| MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts | Jan 21, 2024 | Drug DiscoveryLanguage Modeling | CodeCode Available | 1 | 5 |
| MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction | Apr 23, 2020 | Drug Discoverymolecular representation | CodeCode Available | 1 | 5 |
| GeomGCL: Geometric Graph Contrastive Learning for Molecular Property Prediction | Sep 24, 2021 | Contrastive LearningData Augmentation | CodeCode Available | 1 | 5 |
| Multiresolution Equivariant Graph Variational Autoencoder | Jun 2, 2021 | Graph GenerationImage Generation | CodeCode Available | 1 | 5 |
| Molecular Machine Learning Using Euler Characteristic Transforms | Jul 4, 2025 | molecular representationRepresentation Learning | CodeCode Available | 0 | 5 |
| Molecular Representation Learning by Leveraging Chemical Information | Mar 15, 2021 | Drug DesignGraph Property Prediction | CodeCode Available | 0 | 5 |
| Learning Multi-view Molecular Representations with Structured and Unstructured Knowledge | Jun 14, 2024 | Knowledge GraphsMolecular Property Prediction | CodeCode Available | 0 | 5 |
| MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis | Jun 13, 2024 | Drug DiscoveryMolecular Property Prediction | CodeCode Available | 0 | 5 |
| SE3Set: Harnessing equivariant hypergraph neural networks for molecular representation learning | May 26, 2024 | Computational chemistrymolecular representation | CodeCode Available | 0 | 5 |
| GeoT: A Geometry-aware Transformer for Reliable Molecular Property Prediction and Chemically Interpretable Representation Learning | Jun 29, 2021 | Molecular Property Predictionmolecular representation | CodeCode Available | 0 | 5 |
| UniMatch: Universal Matching from Atom to Task for Few-Shot Drug Discovery | Feb 18, 2025 | Drug DiscoveryFew-Shot Learning | CodeCode Available | 0 | 5 |
| MolMix: A Simple Yet Effective Baseline for Multimodal Molecular Representation Learning | Oct 10, 2024 | molecular representationRepresentation Learning | CodeCode Available | 0 | 5 |
| The Role of Model Architecture and Scale in Predicting Molecular Properties: Insights from Fine-Tuning RoBERTa, BART, and LLaMA | May 2, 2024 | BenchmarkingDrug Discovery | CodeCode Available | 0 | 5 |
| Uni-Mol: A Universal 3D Molecular Representation Learning Framework | Sep 8, 2022 | 3D geometry3D Geometry Prediction | CodeCode Available | 0 | 5 |
| HamNet: Conformation-Guided Molecular Representation with Hamiltonian Neural Networks | May 8, 2021 | 3D geometrymolecular representation | CodeCode Available | 0 | 5 |
| LiteGEM: Lite Geometry Enhanced Molecular Representation Learning for Quantum Property Prediction | Jun 28, 2021 | molecular representationProperty Prediction | CodeCode Available | 0 | 5 |
| PACIA: Parameter-Efficient Adapter for Few-Shot Molecular Property Prediction | Oct 1, 2023 | Few-Shot LearningGraph Neural Network | CodeCode Available | 0 | 5 |
| MotifPiece: A Data-Driven Approach for Effective Motif Extraction and Molecular Representation Learning | Dec 24, 2023 | molecular representationRepresentation Learning | CodeCode Available | 0 | 5 |
| MUBen: Benchmarking the Uncertainty of Molecular Representation Models | Jun 14, 2023 | BenchmarkingDrug Discovery | CodeCode Available | 0 | 5 |
| Adapting Differential Molecular Representation with Hierarchical Prompts for Multi-label Property Prediction | May 29, 2024 | Drug Discoverymolecular representation | CodeCode Available | 0 | 5 |
| Contextual Molecule Representation Learning from Chemical Reaction Knowledge | Feb 21, 2024 | molecular representationRepresentation Learning | CodeCode Available | 0 | 5 |
| Molecular Graph Representation Learning via Structural Similarity Information | Sep 13, 2024 | Graph Representation Learningmolecular representation | CodeCode Available | 0 | 5 |
| BAPULM: Binding Affinity Prediction using Language Models | Nov 6, 2024 | Drug Discoverymolecular representation | CodeCode Available | 0 | 5 |
| Learning Continuous and Data-Driven Molecular Descriptors by Translating Equivalent Chemical Representations | Nov 19, 2018 | Machine Translationmolecular representation | CodeCode Available | 0 | 5 |
| Multi-View Self-Attention for Interpretable Drug-Target Interaction Prediction | May 1, 2020 | BIG-bench Machine LearningDrug Discovery | CodeCode Available | 0 | 5 |
| BatmanNet: Bi-branch Masked Graph Transformer Autoencoder for Molecular Representation | Nov 25, 2022 | Drug DiscoveryMolecular Property Prediction | CodeCode Available | 0 | 5 |
| Ollivier persistent Ricci curvature (OPRC) based molecular representation for drug design | Nov 20, 2020 | BIG-bench Machine LearningDrug Design | CodeCode Available | 0 | 5 |
| Molecular geometric deep learning | Jun 22, 2023 | Deep LearningMolecular Property Prediction | CodeCode Available | 0 | 5 |
| Encrypted machine learning of molecular quantum properties | Dec 5, 2022 | Federated Learningmolecular representation | CodeCode Available | 0 | 5 |
| Physics-Constrained Predictive Molecular Latent Space Discovery with Graph Scattering Variational Autoencoder | Sep 29, 2020 | Drug Discoverymolecular representation | CodeCode Available | 0 | 5 |
| Active Learning of Molecular Data for Task-Specific Objectives | Aug 20, 2024 | Active LearningGaussian Processes | CodeCode Available | 0 | 5 |
| Chemical Language Model Linker: blending text and molecules with modular adapters | Oct 26, 2024 | Language ModelingLanguage Modelling | CodeCode Available | 0 | 5 |
| 2DNMRGym: An Annotated Experimental Dataset for Atom-Level Molecular Representation Learning in 2D NMR via Surrogate Supervision | May 16, 2025 | molecular representationRepresentation Learning | CodeCode Available | 0 | 5 |
| Task-Agnostic Graph Neural Network Evaluation via Adversarial Collaboration | Jan 27, 2023 | BenchmarkingGraph Classification | CodeCode Available | 0 | 5 |
| Substructure-Atom Cross Attention for Molecular Representation Learning | Oct 15, 2022 | Drug DiscoveryGraph Neural Network | —Unverified | 0 | 0 |
| 3D Denoisers are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal Distillation | Sep 8, 2023 | DenoisingKnowledge Distillation | —Unverified | 0 | 0 |
| 3D Graph Contrastive Learning for Molecular Property Prediction | May 31, 2022 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 | 0 |
| 3D-Mol: A Novel Contrastive Learning Framework for Molecular Property Prediction with 3D Information | Sep 28, 2023 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 | 0 |
| A 3D-Shape Similarity-based Contrastive Approach to Molecular Representation Learning | Nov 3, 2022 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 | 0 |
| Accelerating Black-Box Molecular Property Optimization by Adaptively Learning Sparse Subspaces | Jan 2, 2024 | Bayesian Optimizationmolecular representation | —Unverified | 0 | 0 |
| A Comprehensive Review of Generative AI in Healthcare | Oct 1, 2023 | DiagnosticDrug Design | —Unverified | 0 | 0 |
| Active Causal Learning for Decoding Chemical Complexities with Targeted Interventions | Apr 5, 2024 | Active Learningmolecular representation | —Unverified | 0 | 0 |
| AdaptMol: Adaptive Fusion from Sequence String to Topological Structure for Few-shot Drug Discovery | May 17, 2025 | Drug DiscoveryFew-Shot Learning | —Unverified | 0 | 0 |
| AdaMR: Adaptable Molecular Representation for Unified Pre-training Strategy | Dec 28, 2023 | AttributeMolecular Property Prediction | —Unverified | 0 | 0 |
| Advancing Molecular Machine Learning Representations with Stereoelectronics-Infused Molecular Graphs | Aug 8, 2024 | Graph Neural NetworkMolecular Property Prediction | —Unverified | 0 | 0 |
| Associative Learning Mechanism for Drug-Target Interaction Prediction | May 24, 2022 | molecular representationPrediction | —Unverified | 0 | 0 |
| Atomic and Subgraph-aware Bilateral Aggregation for Molecular Representation Learning | May 22, 2023 | Molecular Property Predictionmolecular representation | —Unverified | 0 | 0 |