| MolSets: Molecular Graph Deep Sets Learning for Mixture Property Modeling | Dec 27, 2023 | Graph Neural Networkmixture property prediction | CodeCode Available | 1 |
| GeomGCL: Geometric Graph Contrastive Learning for Molecular Property Prediction | Sep 24, 2021 | Contrastive LearningData Augmentation | CodeCode Available | 1 |
| MolSpectra: Pre-training 3D Molecular Representation with Multi-modal Energy Spectra | Feb 22, 2025 | molecular representation | CodeCode Available | 1 |
| TrimNet: learning molecular representation from triplet messages for biomedicine | Nov 4, 2020 | Drug DiscoveryMolecular Property Prediction | CodeCode Available | 1 |
| GIT-Mol: A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Text | Aug 14, 2023 | Drug DiscoveryImage Captioning | CodeCode Available | 1 |
| Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation | Apr 23, 2024 | Drug Discoverymolecular representation | CodeCode Available | 1 |
| Graph-based Molecular Representation Learning | Jul 8, 2022 | Graph Learningmolecular representation | CodeCode Available | 1 |
| Mol-PECO: a deep learning model to predict human olfactory perception from molecular structures | May 21, 2023 | molecular representationRetrieval | —Unverified | 0 |
| Substructure-Atom Cross Attention for Molecular Representation Learning | Oct 15, 2022 | Drug DiscoveryGraph Neural Network | —Unverified | 0 |
| 3D Denoisers are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal Distillation | Sep 8, 2023 | DenoisingKnowledge Distillation | —Unverified | 0 |
| 3D Graph Contrastive Learning for Molecular Property Prediction | May 31, 2022 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 |
| 3D-Mol: A Novel Contrastive Learning Framework for Molecular Property Prediction with 3D Information | Sep 28, 2023 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 |
| A 3D-Shape Similarity-based Contrastive Approach to Molecular Representation Learning | Nov 3, 2022 | Contrastive LearningMolecular Property Prediction | —Unverified | 0 |
| Accelerating Black-Box Molecular Property Optimization by Adaptively Learning Sparse Subspaces | Jan 2, 2024 | Bayesian Optimizationmolecular representation | —Unverified | 0 |
| A Comprehensive Review of Generative AI in Healthcare | Oct 1, 2023 | DiagnosticDrug Design | —Unverified | 0 |
| Active Causal Learning for Decoding Chemical Complexities with Targeted Interventions | Apr 5, 2024 | Active Learningmolecular representation | —Unverified | 0 |
| AdaptMol: Adaptive Fusion from Sequence String to Topological Structure for Few-shot Drug Discovery | May 17, 2025 | Drug DiscoveryFew-Shot Learning | —Unverified | 0 |
| AdaMR: Adaptable Molecular Representation for Unified Pre-training Strategy | Dec 28, 2023 | AttributeMolecular Property Prediction | —Unverified | 0 |
| Advancing Molecular Machine Learning Representations with Stereoelectronics-Infused Molecular Graphs | Aug 8, 2024 | Graph Neural NetworkMolecular Property Prediction | —Unverified | 0 |
| Associative Learning Mechanism for Drug-Target Interaction Prediction | May 24, 2022 | molecular representationPrediction | —Unverified | 0 |
| Atomic and Subgraph-aware Bilateral Aggregation for Molecular Representation Learning | May 22, 2023 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| Attention-wise masked graph contrastive learning for predicting molecular property | May 2, 2022 | Contrastive LearningGraph Attention | —Unverified | 0 |
| BOOM: Benchmarking Out-Of-distribution Molecular Property Predictions of Machine Learning Models | May 3, 2025 | BenchmarkingHyperparameter Optimization | —Unverified | 0 |
| Can Molecular Evolution Mechanism Enhance Molecular Representation? | Jan 27, 2025 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| ChemRL-GEM: Geometry Enhanced Molecular Representation Learning for Property Prediction | Jun 11, 2021 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| Conformation-Guided Molecular Representation with Hamiltonian Neural Networks | Jan 1, 2021 | 3D geometrymolecular representation | —Unverified | 0 |
| Deep Molecular Representation Learning via Fusing Physical and Chemical Information | Nov 28, 2021 | molecular representationRepresentation Learning | —Unverified | 0 |
| Directed Graph Attention Neural Network Utilizing 3D Coordinates for Molecular Property Prediction | Dec 1, 2020 | Graph AttentionMolecular Property Prediction | —Unverified | 0 |
| Does GNN Pretraining Help Molecular Representation? | Jul 13, 2022 | Drug Discoverymolecular representation | —Unverified | 0 |
| DrugLLM: Open Large Language Model for Few-shot Molecule Generation | May 7, 2024 | Drug DesignDrug Discovery | —Unverified | 0 |
| E3STO: Orbital Inspired SE(3)-Equivariant Molecular Representation for Electron Density Prediction | Oct 8, 2024 | molecular representationPrediction | —Unverified | 0 |
| An Equivariant Pretrained Transformer for Unified 3D Molecular Representation Learning | Feb 20, 2024 | DenoisingDrug Discovery | —Unverified | 0 |
| Evaluating the roughness of structure-property relationships using pretrained molecular representations | May 14, 2023 | molecular representationProperty Prediction | —Unverified | 0 |
| Explainable Molecular Property Prediction: Aligning Chemical Concepts with Predictions via Language Models | May 25, 2024 | Drug DiscoveryMolecular Property Prediction | —Unverified | 0 |
| FARM: Functional Group-Aware Representations for Small Molecules | Oct 2, 2024 | Contrastive LearningDrug Discovery | —Unverified | 0 |
| FineMolTex: Towards Fine-grained Molecular Graph-Text Pre-training | Sep 21, 2024 | Drug Discoverymolecular representation | —Unverified | 0 |
| FragmentNet: Adaptive Graph Fragmentation for Graph-to-Sequence Molecular Representation Learning | Feb 3, 2025 | Graph-to-SequenceMolecular Property Prediction | —Unverified | 0 |
| Generative Models for Automatic Chemical Design | Jul 2, 2019 | molecular representation | —Unverified | 0 |
| GenMol: A Drug Discovery Generalist with Discrete Diffusion | Jan 10, 2025 | Computational EfficiencyDrug Discovery | —Unverified | 0 |
| Geometry-aware Line Graph Transformer Pre-training for Molecular Property Prediction | Sep 1, 2023 | 3D geometryMolecular Property Prediction | —Unverified | 0 |
| GeoRecon: Graph-Level Representation Learning for 3D Molecules via Reconstruction-Based Pretraining | Jun 16, 2025 | DenoisingLanguage Modeling | —Unverified | 0 |
| Bi-level Contrastive Learning for Knowledge-Enhanced Molecule Representations | Jun 2, 2023 | Contrastive LearningKnowledge Graphs | —Unverified | 0 |
| Graph Multi-Similarity Learning for Molecular Property Prediction | Jan 31, 2024 | AttributeContrastive Learning | —Unverified | 0 |
| GraphVAMPNet, using graph neural networks and variational approach to markov processes for dynamical modeling of biomolecules | Jan 12, 2022 | Graph Representation Learningmolecular representation | —Unverified | 0 |
| HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations | Mar 27, 2023 | Molecular DockingMolecular Property Prediction | —Unverified | 0 |
| HiGraphDTI: Hierarchical Graph Representation Learning for Drug-Target Interaction Prediction | Apr 16, 2024 | Graph Representation Learningmolecular representation | —Unverified | 0 |
| Hyperbolic Molecular Representation Learning for Drug Repositioning | Jul 6, 2022 | molecular representationRepresentation Learning | —Unverified | 0 |
| Image-Like Graph Representations for Improved Molecular Property Prediction | Nov 20, 2021 | Graph Neural NetworkMolecular Property Prediction | —Unverified | 0 |
| Improving Performance Prediction of Electrolyte Formulations with Transformer-based Molecular Representation Model | Jun 28, 2024 | molecular representationProperty Prediction | —Unverified | 0 |
| Integrating Chemical Language and Molecular Graph in Multimodal Fused Deep Learning for Drug Property Prediction | Dec 29, 2023 | Deep LearningDrug Discovery | —Unverified | 0 |