| Molecular Machine Learning Using Euler Characteristic Transforms | Jul 4, 2025 | molecular representationRepresentation Learning | CodeCode Available | 0 |
| TRIDENT: Tri-Modal Molecular Representation Learning with Taxonomic Annotations and Local Correspondence | Jun 26, 2025 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| GeoRecon: Graph-Level Representation Learning for 3D Molecules via Reconstruction-Based Pretraining | Jun 16, 2025 | DenoisingLanguage Modeling | —Unverified | 0 |
| AdaptMol: Adaptive Fusion from Sequence String to Topological Structure for Few-shot Drug Discovery | May 17, 2025 | Drug DiscoveryFew-Shot Learning | —Unverified | 0 |
| 2DNMRGym: An Annotated Experimental Dataset for Atom-Level Molecular Representation Learning in 2D NMR via Surrogate Supervision | May 16, 2025 | molecular representationRepresentation Learning | CodeCode Available | 0 |
| Pure Component Property Estimation Framework Using Explainable Machine Learning Methods | May 14, 2025 | molecular representationProperty Prediction | —Unverified | 0 |
| Multi-Modal Molecular Representation Learning via Structure Awareness | May 9, 2025 | Drug Discoverymolecular representation | —Unverified | 0 |
| BOOM: Benchmarking Out-Of-distribution Molecular Property Predictions of Machine Learning Models | May 3, 2025 | BenchmarkingHyperparameter Optimization | —Unverified | 0 |
| Synergistic Benefits of Joint Molecule Generation and Property Prediction | Apr 23, 2025 | Drug Designmolecular representation | —Unverified | 0 |
| MolSpectra: Pre-training 3D Molecular Representation with Multi-modal Energy Spectra | Feb 22, 2025 | molecular representation | CodeCode Available | 1 |
| UniMatch: Universal Matching from Atom to Task for Few-Shot Drug Discovery | Feb 18, 2025 | Drug DiscoveryFew-Shot Learning | CodeCode Available | 0 |
| Knowledge-aware contrastive heterogeneous molecular graph learning | Feb 17, 2025 | BenchmarkingContrastive Learning | —Unverified | 0 |
| FragmentNet: Adaptive Graph Fragmentation for Graph-to-Sequence Molecular Representation Learning | Feb 3, 2025 | Graph-to-SequenceMolecular Property Prediction | —Unverified | 0 |
| MolGraph-xLSTM: A graph-based dual-level xLSTM framework with multi-head mixture-of-experts for enhanced molecular representation and interpretability | Jan 30, 2025 | Drug DiscoveryMixture-of-Experts | —Unverified | 0 |
| Can Molecular Evolution Mechanism Enhance Molecular Representation? | Jan 27, 2025 | Molecular Property Predictionmolecular representation | —Unverified | 0 |
| Representation of Molecules via Algebraic Data Types : Advancing Beyond SMILES & SELFIES | Jan 23, 2025 | molecular representationProbabilistic Programming | —Unverified | 0 |
| GDiffRetro: Retrosynthesis Prediction with Dual Graph Enhanced Molecular Representation and Diffusion Generation | Jan 14, 2025 | molecular representationRetrosynthesis | CodeCode Available | 1 |
| GenMol: A Drug Discovery Generalist with Discrete Diffusion | Jan 10, 2025 | Computational EfficiencyDrug Discovery | —Unverified | 0 |
| MOL-Mamba: Enhancing Molecular Representation with Structural & Electronic Insights | Dec 21, 2024 | Drug DesignMamba | CodeCode Available | 1 |
| SMI-Editor: Edit-based SMILES Language Model with Fragment-level Supervision | Dec 7, 2024 | Language ModelingLanguage Modelling | —Unverified | 0 |
| Tokenizing 3D Molecule Structure with Quantized Spherical Coordinates | Dec 2, 2024 | molecular representationProperty Prediction | —Unverified | 0 |
| BAPULM: Binding Affinity Prediction using Language Models | Nov 6, 2024 | Drug Discoverymolecular representation | CodeCode Available | 0 |
| Chemical Language Model Linker: blending text and molecules with modular adapters | Oct 26, 2024 | Language ModelingLanguage Modelling | CodeCode Available | 0 |
| Multi-view biomedical foundation models for molecule-target and property prediction | Oct 25, 2024 | Drug Discoverymolecular representation | CodeCode Available | 1 |
| MolMix: A Simple Yet Effective Baseline for Multimodal Molecular Representation Learning | Oct 10, 2024 | molecular representationRepresentation Learning | CodeCode Available | 0 |