| Geometry-Complete Diffusion for 3D Molecule Generation and Optimization | Feb 8, 2023 | 3D Molecule GenerationDenoising | CodeCode Available | 2 | 5 |
| FastFlows: Flow-Based Models for Molecular Graph Generation | Jan 28, 2022 | Graph GenerationMolecular Graph Generation | CodeCode Available | 2 | 5 |
| Molecule Generation by Principal Subgraph Mining and Assembling | Jun 29, 2021 | Drug DiscoveryGraph Generation | CodeCode Available | 1 | 5 |
| HyFactor: Hydrogen-count labelled graph-based defactorization Autoencoder | Dec 6, 2021 | BenchmarkingGraph Learning | CodeCode Available | 1 | 5 |
| Sample-Efficient Optimization in the Latent Space of Deep Generative Models via Weighted Retraining | Jun 16, 2020 | Drug DesignMolecular Graph Generation | CodeCode Available | 1 | 5 |
| Conditional Diffusion Based on Discrete Graph Structures for Molecular Graph Generation | Jan 1, 2023 | Drug DiscoveryGraph Generation | CodeCode Available | 1 | 5 |
| Optimization of Molecules via Deep Reinforcement Learning | Oct 19, 2018 | Deep Reinforcement LearningMolecular Graph Generation | CodeCode Available | 1 | 5 |
| 3M-Diffusion: Latent Multi-Modal Diffusion for Language-Guided Molecular Structure Generation | Mar 11, 2024 | DecoderDrug Discovery | CodeCode Available | 1 | 5 |
| GraphAF: a Flow-based Autoregressive Model for Molecular Graph Generation | Jan 26, 2020 | Density EstimationDrug Discovery | CodeCode Available | 1 | 5 |
| The general theory of permutation equivarant neural networks and higher order graph variational encoders | Apr 8, 2020 | Graph GenerationGraph Learning | CodeCode Available | 1 | 5 |
| MolHF: A Hierarchical Normalizing Flow for Molecular Graph Generation | May 15, 2023 | Graph GenerationMolecular Graph Generation | CodeCode Available | 1 | 5 |
| A Simple and Scalable Representation for Graph Generation | Dec 4, 2023 | Graph GenerationMolecular Graph Generation | CodeCode Available | 1 | 5 |
| MoFlow: An Invertible Flow Model for Generating Molecular Graphs | Jun 17, 2020 | Drug DiscoveryGraph Generation | CodeCode Available | 1 | 5 |
| Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation | May 21, 2023 | 3D Molecule GenerationDrug Discovery | CodeCode Available | 1 | 5 |
| Junction Tree Variational Autoencoder for Molecular Graph Generation | Feb 12, 2018 | Drug DiscoveryGraph Generation | CodeCode Available | 1 | 5 |
| Graph Generation with Diffusion Mixture | Feb 7, 2023 | 3D Molecule GenerationGraph Generation | CodeCode Available | 1 | 5 |
| Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Adversarial Networks | Feb 15, 2023 | Generative Adversarial NetworkMolecular Graph Generation | CodeCode Available | 1 | 5 |
| Objective-Reinforced Generative Adversarial Networks (ORGAN) for Sequence Generation Models | May 30, 2017 | Molecular Graph GenerationMusic Generation | CodeCode Available | 0 | 5 |
| Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation | Jun 7, 2018 | Graph GenerationMolecular Graph Generation | CodeCode Available | 0 | 5 |
| GraphEBM: Molecular Graph Generation with Energy-Based Models | Jan 31, 2021 | Graph GenerationMolecular Graph Generation | CodeCode Available | 0 | 5 |
| GraphNVP: An Invertible Flow Model for Generating Molecular Graphs | May 28, 2019 | Graph GenerationMolecular Graph Generation | CodeCode Available | 0 | 5 |
| GraphSPNs: Sum-Product Networks Benefit From Canonical Orderings | Aug 18, 2024 | Molecular Graph Generationvalid | CodeCode Available | 0 | 5 |
| High-Dimensional Bayesian Optimisation with Variational Autoencoders and Deep Metric Learning | Jun 7, 2021 | Bayesian OptimisationMetric Learning | CodeCode Available | 0 | 5 |
| Instruction-Based Molecular Graph Generation with Unified Text-Graph Diffusion Model | Aug 19, 2024 | Computational chemistryDenoising | CodeCode Available | 0 | 5 |
| MARS: Markov Molecular Sampling for Multi-objective Drug Discovery | Mar 18, 2021 | Drug DiscoveryGraph Neural Network | CodeCode Available | 0 | 5 |
| MolecularRNN: Generating realistic molecular graphs with optimized properties | May 31, 2019 | Drug DiscoveryMolecular Graph Generation | CodeCode Available | 0 | 5 |
| Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models | Nov 29, 2018 | BenchmarkingDiversity | CodeCode Available | 0 | 5 |
| Reinforced Molecular Optimization with Neighborhood-Controlled Grammars | Nov 14, 2020 | Graph GenerationMolecular Graph Generation | CodeCode Available | 0 | 5 |
| GraphNVP: an Invertible Flow-based Model for Generating Molecular Graphs | Sep 25, 2019 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |
| Graph Energy-based Model for Molecular Graph Generation | Feb 26, 2021 | Graph Generationmodel | —Unverified | 0 | 0 |
| Learning-Order Autoregressive Models with Application to Molecular Graph Generation | Mar 7, 2025 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |
| Lift Your Molecules: Molecular Graph Generation in Latent Euclidean Space | Jun 15, 2024 | Edge ClassificationGraph Generation | —Unverified | 0 | 0 |
| Black Box Recursive Translations for Molecular Optimization | Dec 21, 2019 | Drug DiscoveryMolecular Graph Generation | —Unverified | 0 | 0 |
| GraphEBM: Towards Permutation Invariant and Multi-Objective Molecular Graph Generation | Sep 29, 2021 | Drug DiscoveryGraph Generation | —Unverified | 0 | 0 |
| Molecular Graph Generation by Decomposition and Reassembling | Dec 11, 2022 | Drug DiscoveryGraph Generation | —Unverified | 0 | 0 |
| Molecular Graph Generation via Geometric Scattering | Oct 12, 2021 | Drug DesignGraph Generation | —Unverified | 0 | 0 |
| Molecular graph generation with Graph Neural Networks | Dec 14, 2020 | Drug DiscoveryGraph Generation | —Unverified | 0 | 0 |
| Molecular Inverse-Design Platform for Material Industries | Apr 24, 2020 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |
| All SMILES Variational Autoencoder | May 30, 2019 | AllDrug Discovery | —Unverified | 0 | 0 |
| Training-Free Guidance for Discrete Diffusion Models for Molecular Generation | Sep 11, 2024 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |
| GraphDF: A Discrete Flow Model for Molecular Graph Generation | Feb 1, 2021 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |
| FragFM: Hierarchical Framework for Efficient Molecule Generation via Fragment-Level Discrete Flow Matching | Feb 19, 2025 | DiversityDrug Discovery | —Unverified | 0 | 0 |
| Flatten Graphs as Sequences: Transformers are Scalable Graph Generators | Feb 4, 2025 | DecoderGraph Generation | —Unverified | 0 | 0 |
| Overcoming Order in Autoregressive Graph Generation | Feb 4, 2024 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |
| Pretraining Generative Flow Networks with Inexpensive Rewards for Molecular Graph Generation | Mar 8, 2025 | Drug DesignGraph Generation | —Unverified | 0 | 0 |
| Realistic molecule optimization on a learned graph manifold | Jun 3, 2021 | Drug DesignGraph Generation | —Unverified | 0 | 0 |
| Will More Expressive Graph Neural Networks do Better on Generative Tasks? | Aug 23, 2023 | Bayesian OptimisationGraph Generation | —Unverified | 0 | 0 |
| Conditional β-VAE for De Novo Molecular Generation | May 2, 2022 | Drug DiscoveryMolecular Graph Generation | —Unverified | 0 | 0 |
| GUISE: Graph GaUssIan Shading watErmark | Oct 14, 2024 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |
| Spanning Tree-based Graph Generation for Molecules | Sep 29, 2021 | Graph GenerationMolecular Graph Generation | —Unverified | 0 | 0 |