| BMFM-RNA: An Open Framework for Building and Evaluating Transcriptomic Foundation Models | Jun 17, 2025 | BenchmarkingLanguage Modeling | CodeCode Available | 2 |
| GeoRecon: Graph-Level Representation Learning for 3D Molecules via Reconstruction-Based Pretraining | Jun 16, 2025 | DenoisingLanguage Modeling | —Unverified | 0 |
| Diffusion Sequence Models for Enhanced Protein Representation and Generation | Jun 9, 2025 | Language ModelingLanguage Modelling | CodeCode Available | 1 |
| Masked Language Models are Good Heterogeneous Graph Generalizers | Jun 6, 2025 | Graph LearningLanguage Modeling | CodeCode Available | 0 |
| Improving Low-Resource Morphological Inflection via Self-Supervised Objectives | Jun 5, 2025 | DecoderLanguage Modeling | —Unverified | 0 |
| GigaAM: Efficient Self-Supervised Learner for Speech Recognition | Jun 1, 2025 | Automatic Speech RecognitionLanguage Modeling | CodeCode Available | 4 |
| HAD: Hybrid Architecture Distillation Outperforms Teacher in Genomic Sequence Modeling | May 27, 2025 | Language ModelingLanguage Modelling | —Unverified | 0 |
| Ankh3: Multi-Task Pretraining with Sequence Denoising and Completion Enhances Protein Representations | May 26, 2025 | DenoisingLanguage Modeling | —Unverified | 0 |
| ADALog: Adaptive Unsupervised Anomaly detection in Logs with Self-attention Masked Language Model | May 15, 2025 | Anomaly DetectionLanguage Modeling | —Unverified | 0 |
| CreoPep: A Universal Deep Learning Framework for Target-Specific Peptide Design and Optimization | May 5, 2025 | DiversityLanguage Modeling | CodeCode Available | 1 |