| Rigid Protein-Protein Docking via Equivariant Elliptic-Paraboloid Interface Prediction | Jan 17, 2024 | Drug Design | CodeCode Available | 0 |
| Roughness of molecular property landscapes and its impact on modellability | Jul 19, 2022 | Drug Designregression | CodeCode Available | 0 |
| An Efficient MCMC Approach to Energy Function Optimization in Protein Structure Prediction | Nov 6, 2022 | CPUDrug Design | CodeCode Available | 0 |
| Federated Discrete Denoising Diffusion Model for Molecular Generation with OpenFL | Jan 21, 2025 | DenoisingDrug Design | CodeCode Available | 0 |
| CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues | Dec 19, 2023 | Contrastive LearningDrug Design | CodeCode Available | 0 |
| Equivalent Distance Geometry Error for Molecular Conformation Comparison | Nov 13, 2021 | Drug Design | CodeCode Available | 0 |
| Learning big logical rules by joining small rules | Jan 29, 2024 | Drug DesignInductive logic programming | CodeCode Available | 0 |
| Critical review of conformational B-cell epitope prediction methods | Jan 10, 2023 | BenchmarkingDrug Design | CodeCode Available | 0 |
| Large Language Models for Controllable Multi-property Multi-objective Molecule Optimization | May 29, 2025 | Drug Design | CodeCode Available | 0 |
| EquiBoost: An Equivariant Boosting Approach to Molecular Conformation Generation | Jan 9, 2025 | DiversityDrug Design | CodeCode Available | 0 |
| ClaPIM: Scalable Sequence CLAssification using Processing-In-Memory | Feb 16, 2023 | ClassificationDrug Design | CodeCode Available | 0 |
| Insights into performance evaluation of com-pound-protein interaction prediction methods | Jan 28, 2022 | Drug Design | CodeCode Available | 0 |
| CASTER: Predicting Drug Interactions with Chemical Substructure Representation | Nov 15, 2019 | Dictionary LearningDrug Design | CodeCode Available | 0 |
| Predicting solvation free energies with an implicit solvent machine learning potential | May 31, 2024 | Drug DesignGraph Neural Network | CodeCode Available | 0 |
| Image-Conditioned Graph Generation for Road Network Extraction | Oct 31, 2019 | Drug DesignGraph Generation | CodeCode Available | 0 |
| Empirical Evidence for the Fragment level Understanding on Drug Molecular Structure of LLMs | Jan 15, 2024 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| Visualizing Convolutional Neural Network Protein-Ligand Scoring | Mar 6, 2018 | Drug Design | CodeCode Available | 0 |
| DrugGen enhances drug discovery with large language models and reinforcement learning | Apr 18, 2025 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| Sever: A Robust Meta-Algorithm for Stochastic Optimization | Mar 7, 2018 | Drug DesignStochastic Optimization | CodeCode Available | 0 |
| YZS-model: A Predictive Model for Organic Drug Solubility Based on Graph Convolutional Networks and Transformer-Attention | Jun 27, 2024 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| Guided Multi-objective Generative AI to Enhance Structure-based Drug Design | May 20, 2024 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| GGL-PPI: Geometric Graph Learning to Predict Mutation-Induced Binding Free Energy Changes | Sep 23, 2023 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| GEO-Nav: a geometric dataset of voltage-gated sodium channels | Jun 21, 2023 | Drug DesignMorphological Analysis | CodeCode Available | 0 |
| Protein-Ligand Scoring with Convolutional Neural Networks | Dec 8, 2016 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| TurboHopp: Accelerated Molecule Scaffold Hopping with Consistency Models | Oct 28, 2024 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| Carbonic anhydrase II simulated with a universal neural network potential | Mar 18, 2025 | Drug Design | CodeCode Available | 0 |
| Dr-COVID: Graph Neural Networks for SARS-CoV-2 Drug Repurposing | Dec 3, 2020 | Drug DesignGraph Neural Network | CodeCode Available | 0 |
| DP-Fast MH: Private, Fast, and Accurate Metropolis-Hastings for Large-Scale Bayesian Inference | Mar 10, 2023 | Bayesian InferenceDrug Design | CodeCode Available | 0 |
| Discriminative Embeddings of Latent Variable Models for Structured Data | Mar 17, 2016 | Drug Design | CodeCode Available | 0 |
| Using Molecular Embeddings in QSAR Modeling: Does it Make a Difference? | Mar 20, 2021 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| Bridging Quantum and Classical Computing in Drug Design: Architecture Principles for Improved Molecule Generation | Jun 1, 2025 | Bayesian OptimizationDrug Design | CodeCode Available | 0 |
| Geometric Graph Learning with Extended Atom-Types Features for Protein-Ligand Binding Affinity Prediction | Jan 15, 2023 | Drug DesignGraph Learning | CodeCode Available | 0 |
| Diff4VS: HIV-inhibiting Molecules Generation with Classifier Guidance Diffusion for Virtual Screening | Jul 20, 2024 | Drug Design | CodeCode Available | 0 |
| A Deep Generative Model for Fragment-Based Molecule Generation | Feb 28, 2020 | Drug DesignLanguage Modeling | CodeCode Available | 0 |
| Utilizing Reinforcement Learning for de novo Drug Design | Mar 30, 2023 | DiversityDrug Design | CodeCode Available | 0 |
| Vector Optimization with Gaussian Process Bandits | Dec 3, 2024 | Drug Design | CodeCode Available | 0 |
| A Comparative Analysis of the Ensemble Methods for Drug Design | Dec 11, 2020 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| DeepRLI: A Multi-objective Framework for Universal Protein--Ligand Interaction Prediction | Jan 19, 2024 | Contrastive LearningDrug Design | CodeCode Available | 0 |
| From Theory to Therapy: Reframing SBDD Model Evaluation via Practical Metrics | Jun 13, 2024 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| Deep Reinforcement Learning for De-Novo Drug Design | Nov 29, 2017 | Deep Reinforcement LearningDrug Design | CodeCode Available | 0 |