| From Byte to Bench to Bedside: Molecular Dynamics Simulations and Drug Discovery | Nov 28, 2023 | Drug DesignDrug Discovery | —Unverified | 0 |
| GENEOnet: A new machine learning paradigm based on Group Equivariant Non-Expansive Operators. An application to protein pocket detection | Jan 31, 2022 | Drug Design | —Unverified | 0 |
| Genesis: Towards the Automation of Systems Biology Research | Aug 20, 2024 | Drug DesignRelational Reasoning | —Unverified | 0 |
| GenShin:geometry-enhanced structural graph embodies binding pose can better predicting compound-protein interaction affinity | Mar 16, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| Geometric Constraints in Probabilistic Manifolds: A Bridge from Molecular Dynamics to Structured Diffusion Processes | Jul 10, 2023 | DenoisingDrug Design | —Unverified | 0 |
| Geometric-informed GFlowNets for Structure-Based Drug Design | Jun 16, 2024 | Drug DesignDrug Discovery | —Unverified | 0 |
| GFlowNet Pretraining with Inexpensive Rewards | Sep 15, 2024 | Drug DesignUnsupervised Pre-training | —Unverified | 0 |
| Graph-augmented Convolutional Networks on Drug-Drug Interactions Prediction | Dec 8, 2019 | Drug DesignDrug Discovery | —Unverified | 0 |
| Graph-convolution neural network-based flexible docking utilizing coarse-grained distance matrix | Aug 27, 2020 | Drug DesignPrediction | —Unverified | 0 |
| Graph Memory Networks for Molecular Activity Prediction | Jan 8, 2018 | Activity PredictionDrug Design | —Unverified | 0 |
| Happy People -- Image Synthesis as Black-Box Optimization Problem in the Discrete Latent Space of Deep Generative Models | Jun 11, 2023 | Drug DesignImage Generation | —Unverified | 0 |
| Hashing for Protein Structure Similarity Search | Nov 13, 2024 | Drug DesignProtein Function Prediction | —Unverified | 0 |
| HCAF-DTA: drug-target binding affinity prediction with cross-attention fused hypergraph neural networks | Apr 2, 2025 | Drug DesignPrediction | —Unverified | 0 |
| Highly Scalable Tensor Factorization for Prediction of Drug-Protein Interaction Type | Dec 1, 2015 | Drug DesignVocal Bursts Type Prediction | —Unverified | 0 |
| Hit and Lead Discovery with Explorative RL and Fragment-based Molecule Generation | Oct 4, 2021 | Drug DesignMolecular Docking | —Unverified | 0 |
| How to Detect and Defeat Molecular Mirage: A Metric-Driven Benchmark for Hallucination in LLM-based Molecular Comprehension | Apr 10, 2025 | Computational EfficiencyDecoder | —Unverified | 0 |
| Hybrid quantum cycle generative adversarial network for small molecule generation | Dec 28, 2023 | DiversityDrug Design | —Unverified | 0 |
| HydraScreen: A Generalizable Structure-Based Deep Learning Approach to Drug Discovery | Sep 22, 2023 | Drug DesignDrug Discovery | —Unverified | 0 |
| Ideal gas behavior of rotamerically defined conformers in native globular proteins | Apr 30, 2015 | Drug DesignProtein Design | —Unverified | 0 |
| ImmunoLingo: Linguistics-based formalization of the antibody language | Sep 26, 2022 | Drug DesignSpecificity | —Unverified | 0 |
| Improving Molecular Graph Generation with Flow Matching and Optimal Transport | Nov 8, 2024 | Drug DesignGraph Generation | —Unverified | 0 |
| Improving Targeted Molecule Generation through Language Model Fine-Tuning Via Reinforcement Learning | May 10, 2024 | Drug DesignLanguage Modeling | —Unverified | 0 |
| Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation? | Mar 8, 2023 | Drug DesignDrug Discovery | —Unverified | 0 |
| In Silico Approaches to Deliver Better Antibodies by Design: The Past, the Present and the Future | May 12, 2023 | Drug Design | —Unverified | 0 |
| Rectified Flow For Structure Based Drug Design | Dec 2, 2024 | AvgDiversity | —Unverified | 0 |
| Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge | Feb 18, 2024 | Drug DesignMolecular Docking | —Unverified | 0 |
| Reimagining Target-Aware Molecular Generation through Retrieval-Enhanced Aligned Diffusion | Jun 17, 2025 | Drug DesignDrug Discovery | —Unverified | 0 |
| REINFORCE-ING Chemical Language Models in Drug Design | Jan 27, 2025 | Drug Design | —Unverified | 0 |
| PaccMann^RL: Designing anticancer drugs from transcriptomic data via reinforcement learning | Aug 29, 2019 | Computational chemistryDrug Design | —Unverified | 0 |
| Reinforcement Learning for Personalized Drug Discovery and Design for Complex Diseases: A Systems Pharmacology Perspective | Jan 21, 2022 | Drug DesignDrug Discovery | —Unverified | 0 |
| Mining for Potent Inhibitors through Artificial Intelligence and Physics: A Unified Methodology for Ligand Based and Structure Based Drug Design | Oct 5, 2021 | Deep Reinforcement LearningDrug Design | —Unverified | 0 |
| Representation Learning on Graphs: Methods and Applications | Sep 17, 2017 | BIG-bench Machine LearningDimensionality Reduction | —Unverified | 0 |
| Research and development of MolAICal for drug design via deep learning and classical programming | Jun 17, 2020 | Deep LearningDrug Design | —Unverified | 0 |
| Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion | Mar 4, 2024 | Contrastive LearningDrug Design | —Unverified | 0 |
| Retro Drug Design: From Target Properties to Molecular Structures | May 11, 2021 | Drug DesignDrug Discovery | —Unverified | 0 |
| RetroGNN: Approximating Retrosynthesis by Graph Neural Networks for De Novo Drug Design | Nov 25, 2020 | Drug DesignRetrosynthesis | —Unverified | 0 |
| Retro-prob: Retrosynthetic Planning Based on a Probabilistic Model | May 25, 2024 | Drug DesignRetrosynthesis | —Unverified | 0 |
| Rigidity strengthening is a vital mechanism for protein-ligand binding | Mar 31, 2017 | Drug DesignProtein Design | —Unverified | 0 |
| SAFE setup for generative molecular design | Oct 26, 2024 | Data AugmentationDrug Design | —Unverified | 0 |
| Scaffold-constrained molecular generation | Sep 15, 2020 | Drug DesignDrug Discovery | —Unverified | 0 |
| ScatterSample: Diversified Label Sampling for Data Efficient Graph Neural Network Learning | Jun 9, 2022 | Active LearningDrug Design | —Unverified | 0 |
| Evaluating Molecule Synthesizability via Retrosynthetic Planning and Reaction Prediction | Nov 13, 2024 | Drug DesignDrug Discovery | —Unverified | 0 |
| Self-Organizing Maps of Unbiased Ligand-Target Binding Pathways and Kinetics | Sep 19, 2024 | Drug DesignDrug Discovery | —Unverified | 0 |
| Semi-Supervised GCN for learning Molecular Structure-Activity Relationships | Jan 25, 2022 | Drug DesignGraph Neural Network | —Unverified | 0 |
| Shape Complementarity Analysis for Objects of Arbitrary Shape | Dec 1, 2017 | Drug Designglobal-optimization | —Unverified | 0 |
| Shape-conditioned 3D Molecule Generation via Equivariant Diffusion Models | Aug 23, 2023 | 3D Molecule GenerationDrug Design | —Unverified | 0 |
| ShEPhERD: Diffusing shape, electrostatics, and pharmacophores for bioisosteric drug design | Oct 22, 2024 | Drug Design | —Unverified | 0 |
| Spherical Distance Metrics Applied to Protein Structure Classification | Dec 18, 2015 | ClassificationClustering | —Unverified | 0 |
| Stabilizing Policy Gradients for Stochastic Differential Equations via Consistency with Perturbation Process | Mar 7, 2024 | Drug DesignPolicy Gradient Methods | —Unverified | 0 |
| StriderNET: A Graph Reinforcement Learning Approach to Optimize Atomic Structures on Rough Energy Landscapes | Jan 29, 2023 | Drug Design | —Unverified | 0 |