| PrefixMol: Target- and Chemistry-aware Molecule Design via Prefix Embedding | Feb 14, 2023 | Drug DesignMulti-Task Learning | —Unverified | 0 |
| 3D Molecular Generation via Virtual Dynamics | Feb 12, 2023 | Drug DesignDrug Discovery | —Unverified | 0 |
| Transfer Learning for Bayesian Optimization: A Survey | Feb 12, 2023 | Bayesian OptimizationDrug Design | —Unverified | 0 |
| Protein-protein docking using a tensor train black-box optimization method | Feb 7, 2023 | Drug Design | —Unverified | 0 |
| Data-Efficient Protein 3D Geometric Pretraining via Refinement of Diffused Protein Structure Decoy | Feb 5, 2023 | DiversityDrug Design | —Unverified | 0 |
| Persistent Dirac for molecular representation | Feb 5, 2023 | Drug Designmolecular representation | —Unverified | 0 |
| StriderNET: A Graph Reinforcement Learning Approach to Optimize Atomic Structures on Rough Energy Landscapes | Jan 29, 2023 | Drug Design | —Unverified | 0 |
| Domain-Agnostic Molecular Generation with Chemical Feedback | Jan 26, 2023 | Drug DesignLanguage Modeling | CodeCode Available | 1 |
| Geometric Graph Learning with Extended Atom-Types Features for Protein-Ligand Binding Affinity Prediction | Jan 15, 2023 | Drug DesignGraph Learning | CodeCode Available | 0 |
| Critical review of conformational B-cell epitope prediction methods | Jan 10, 2023 | BenchmarkingDrug Design | CodeCode Available | 0 |
| Synthesis-driven design of 3D molecules for structure-based drug discovery using geometric transformers | Dec 31, 2022 | Drug DesignDrug Discovery | —Unverified | 0 |
| EDoG: Adversarial Edge Detection For Graph Neural Networks | Dec 27, 2022 | Drug DesignEdge Detection | —Unverified | 0 |
| SVSBI: Sequence-based virtual screening of biomolecular interactions | Dec 27, 2022 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| Multi-modal Molecule Structure-text Model for Text-based Retrieval and Editing | Dec 21, 2022 | Contrastive LearningDrug Design | CodeCode Available | 2 |
| xTrimoABFold: De novo Antibody Structure Prediction without MSA | Nov 30, 2022 | Computational EfficiencyDrug Design | —Unverified | 0 |
| Protein Language Models and Structure Prediction: Connection and Progression | Nov 30, 2022 | Drug DesignLanguage Modelling | CodeCode Available | 1 |
| Reinforced Genetic Algorithm for Structure-based Drug Design | Nov 28, 2022 | Combinatorial OptimizationDrug Design | CodeCode Available | 1 |
| Probabilistic thermal stability prediction through sparsity promoting transformer representation | Nov 10, 2022 | Drug Design | —Unverified | 0 |
| An Efficient MCMC Approach to Energy Function Optimization in Protein Structure Prediction | Nov 6, 2022 | CPUDrug Design | CodeCode Available | 0 |
| A Systematic Survey of Chemical Pre-trained Models | Oct 29, 2022 | Drug Designmolecular representation | CodeCode Available | 2 |
| Exploring Data-Driven Chemical SMILES Tokenization Approaches to Identify Key Protein-Ligand Binding Moieties | Oct 26, 2022 | Drug DesignDrug Discovery | —Unverified | 0 |
| Structure-based Drug Design with Equivariant Diffusion Models | Oct 24, 2022 | Drug DesignSpecificity | CodeCode Available | 2 |
| Structure-based drug design with geometric deep learning | Oct 19, 2022 | Deep LearningDrug Design | —Unverified | 0 |
| Equivariant Shape-Conditioned Generation of 3D Molecules for Ligand-Based Drug Design | Oct 6, 2022 | Drug Designvalid | CodeCode Available | 1 |
| DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking | Oct 4, 2022 | Blind DockingDrug Design | CodeCode Available | 3 |
| ImmunoLingo: Linguistics-based formalization of the antibody language | Sep 26, 2022 | Drug DesignSpecificity | —Unverified | 0 |
| Uni-Mol: A Universal 3D Molecular Representation Learning Framework | Sep 8, 2022 | 3D geometry3D Geometry Prediction | CodeCode Available | 0 |
| Exploiting Pretrained Biochemical Language Models for Targeted Drug Design | Sep 2, 2022 | Drug Design | CodeCode Available | 1 |
| Tailoring Molecules for Protein Pockets: a Transformer-based Generative Solution for Structured-based Drug Design | Aug 30, 2022 | DecoderDrug Design | CodeCode Available | 1 |
| HiGNN: Hierarchical Informative Graph Neural Networks for Molecular Property Prediction Equipped with Feature-Wise Attention | Aug 30, 2022 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| From Static to Dynamic Structures: Improving Binding Affinity Prediction with Graph-Based Deep Learning | Aug 19, 2022 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| Widely Used and Fast De Novo Drug Design by a Protein Sequence-Based Reinforcement Learning Model | Aug 14, 2022 | Drug DesignDrug Discovery | —Unverified | 0 |
| Literature Review: Graph Kernels in Chemoinformatics | Aug 9, 2022 | Drug Design | —Unverified | 0 |
| Learning programs with magic values | Aug 5, 2022 | Drug DesignInductive logic programming | CodeCode Available | 1 |
| A Ligand-and-structure Dual-driven Deep Learning Method for the Discovery of Highly Potent GnRH1R Antagonist to treat Uterine Diseases | Jul 23, 2022 | Activity PredictionDrug Design | —Unverified | 0 |
| Low cost prediction of probability distributions of molecular properties for early virtual screening | Jul 21, 2022 | Drug Design | —Unverified | 0 |
| Roughness of molecular property landscapes and its impact on modellability | Jul 19, 2022 | Drug Designregression | CodeCode Available | 0 |
| Prediction of protein allosteric signalling pathways and functional residues through paths of optimised propensity | Jul 14, 2022 | Drug Design | —Unverified | 0 |
| Autonomous Drug Design with Multi-Armed Bandits | Jul 4, 2022 | Drug DesignMulti-Armed Bandits | —Unverified | 0 |
| A fully differentiable ligand pose optimization framework guided by deep learning and traditional scoring functions | Jun 27, 2022 | Drug Design | CodeCode Available | 1 |
| LogGENE: A smooth alternative to check loss for Deep Healthcare Inference Tasks | Jun 19, 2022 | Binary ClassificationDrug Design | —Unverified | 0 |
| SHREC 2022: Protein-ligand binding site recognition | Jun 13, 2022 | Drug DesignMolecular Docking | CodeCode Available | 1 |
| ScatterSample: Diversified Label Sampling for Data Efficient Graph Neural Network Learning | Jun 9, 2022 | Active LearningDrug Design | —Unverified | 0 |
| Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets | May 15, 2022 | Drug DesignGraph Neural Network | CodeCode Available | 2 |
| 3DLinker: An E(3) Equivariant Variational Autoencoder for Molecular Linker Design | May 15, 2022 | Drug Design | CodeCode Available | 1 |
| One-way Explainability Isn't The Message | May 5, 2022 | Drug Design | —Unverified | 0 |
| Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoders | Mar 23, 2022 | Bayesian OptimizationDenoising | CodeCode Available | 1 |
| A 3D Generative Model for Structure-Based Drug Design | Mar 20, 2022 | Drug Designvalid | CodeCode Available | 2 |
| Molecule Generation for Drug Design: a Graph Learning Perspective | Feb 18, 2022 | Drug DesignGraph Learning | —Unverified | 0 |
| Interactivity: the missing link between virtual reality technology and drug discovery pipelines | Feb 8, 2022 | Drug DesignDrug Discovery | —Unverified | 0 |