| Diffusing on Two Levels and Optimizing for Multiple Properties: A Novel Approach to Generating Molecules with Desirable Properties | Oct 5, 2023 | Drug Design | —Unverified | 0 |
| TacoGFN: Target-conditioned GFlowNet for Structure-based Drug Design | Oct 5, 2023 | Active LearningDrug Design | CodeCode Available | 1 |
| De Novo Drug Design with Joint Transformers | Oct 3, 2023 | DecoderDrug Design | —Unverified | 0 |
| A Comprehensive Review of Generative AI in Healthcare | Oct 1, 2023 | DiagnosticDrug Design | —Unverified | 0 |
| Language models in molecular discovery | Sep 28, 2023 | ChatbotComputational chemistry | —Unverified | 0 |
| Curiosity as a Self-Supervised Method to Improve Exploration in De novo Drug Design | Sep 24, 2023 | DiversityDrug Design | CodeCode Available | 0 |
| GGL-PPI: Geometric Graph Learning to Predict Mutation-Induced Binding Free Energy Changes | Sep 23, 2023 | Drug DesignDrug Discovery | CodeCode Available | 0 |
| HydraScreen: A Generalizable Structure-Based Deep Learning Approach to Drug Discovery | Sep 22, 2023 | Drug DesignDrug Discovery | —Unverified | 0 |
| Structure to Property: Chemical Element Embeddings and a Deep Learning Approach for Accurate Prediction of Chemical Properties | Sep 17, 2023 | DecoderDrug Design | CodeCode Available | 1 |
| NLRP3 monomer Functional Dynamics: from the Effects of Allosteric Binding to Implications for Drug Design | Sep 7, 2023 | Drug Design | —Unverified | 0 |
| Unveiling the frontiers of deep learning: innovations shaping diverse domains | Sep 6, 2023 | Deep LearningDrug Design | —Unverified | 0 |
| The known unknowns of the Hsp90 chaperone | Aug 31, 2023 | Drug DesignKnown Unknowns | —Unverified | 0 |
| Shape-conditioned 3D Molecule Generation via Equivariant Diffusion Models | Aug 23, 2023 | 3D Molecule GenerationDrug Design | —Unverified | 0 |
| Learning MDL logic programs from noisy data | Aug 18, 2023 | Drug DesignInductive logic programming | CodeCode Available | 0 |
| Benchmarking Generated Poses: How Rational is Structure-based Drug Design with Generative Models? | Aug 14, 2023 | BenchmarkingDrug Design | CodeCode Available | 1 |
| DiffHopp: A Graph Diffusion Model for Novel Drug Design via Scaffold Hopping | Aug 14, 2023 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| CTAGE: Curvature-Based Topology-Aware Graph Embedding for Learning Molecular Representations | Jul 25, 2023 | Drug DesignGraph Embedding | —Unverified | 0 |
| Machine-learned molecular mechanics force field for the simulation of protein-ligand systems and beyond | Jul 13, 2023 | Drug DesignDrug Discovery | CodeCode Available | 2 |
| Geometric Constraints in Probabilistic Manifolds: A Bridge from Molecular Dynamics to Structured Diffusion Processes | Jul 10, 2023 | DenoisingDrug Design | —Unverified | 0 |
| ReactIE: Enhancing Chemical Reaction Extraction with Weak Supervision | Jul 4, 2023 | Drug Design | —Unverified | 0 |
| Protein-DNA binding sites prediction based on pre-trained protein language model and contrastive learning | Jun 28, 2023 | Contrastive LearningDrug Design | CodeCode Available | 1 |
| Meta-Path-based Probabilistic Soft Logic for Drug-Target Interaction Prediction | Jun 25, 2023 | Drug Design | —Unverified | 0 |
| Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop | Jun 22, 2023 | Computational EfficiencyDrug Design | CodeCode Available | 1 |
| GEO-Nav: a geometric dataset of voltage-gated sodium channels | Jun 21, 2023 | Drug DesignMorphological Analysis | CodeCode Available | 0 |
| Geometric Deep Learning for Structure-Based Drug Design: A Survey | Jun 20, 2023 | BenchmarkingDeep Learning | CodeCode Available | 1 |
| SynerGPT: In-Context Learning for Personalized Drug Synergy Prediction and Drug Design | Jun 19, 2023 | Drug DesignIn-Context Learning | —Unverified | 0 |
| Happy People -- Image Synthesis as Black-Box Optimization Problem in the Discrete Latent Space of Deep Generative Models | Jun 11, 2023 | Drug DesignImage Generation | —Unverified | 0 |
| Phen-DC 3 Induces Refolding of Human Telomeric DNA into a Chair-Type Antiparallel G-Quadruplex through Ligand Intercalation | Jun 7, 2023 | Drug Design | —Unverified | 0 |
| Balancing Exploration and Exploitation: Disentangled β-CVAE in De Novo Drug Design | Jun 2, 2023 | DisentanglementDrug Design | —Unverified | 0 |
| Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and Elaboration | May 30, 2023 | Drug Design | CodeCode Available | 2 |
| Approximation-Generalization Trade-offs under (Approximate) Group Equivariance | May 27, 2023 | Drug Design | —Unverified | 0 |
| Learning Subpocket Prototypes for Generalizable Structure-based Drug Design | May 22, 2023 | 3D Molecule GenerationDrug Design | CodeCode Available | 1 |
| Generation of 3D Molecules in Pockets via Language Model | May 17, 2023 | 3D Molecule GenerationDrug Design | —Unverified | 0 |
| In Silico Approaches to Deliver Better Antibodies by Design: The Past, the Present and the Future | May 12, 2023 | Drug Design | —Unverified | 0 |
| Knowledge graph-enhanced molecular contrastive learning with functional prompt | May 4, 2023 | Contrastive LearningDrug Design | —Unverified | 0 |
| Optimizing Drug Design by Merging Generative AI With Active Learning Frameworks | May 4, 2023 | Active LearningDrug Design | —Unverified | 0 |
| O-GNN: Incorporating Ring Priors into Molecular Modeling | May 1, 2023 | Drug DesignGraph Regression | CodeCode Available | 1 |
| SILVR: Guided Diffusion for Molecule Generation | Apr 21, 2023 | Drug Design | CodeCode Available | 2 |
| An Equivariant Generative Framework for Molecular Graph-Structure Co-Design | Apr 12, 2023 | 3D geometryDrug Design | CodeCode Available | 0 |
| Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text | Mar 30, 2023 | Drug DesignLiterature Mining | —Unverified | 0 |
| Utilizing Reinforcement Learning for de novo Drug Design | Mar 30, 2023 | DiversityDrug Design | CodeCode Available | 0 |
| Molecular Property Prediction by Semantic-invariant Contrastive Learning | Mar 13, 2023 | Contrastive LearningDrug Design | —Unverified | 0 |
| Bridging the Gap between Chemical Reaction Pretraining and Conditional Molecule Generation with a Unified Model | Mar 13, 2023 | Drug DesignRepresentation Learning | CodeCode Available | 1 |
| DP-Fast MH: Private, Fast, and Accurate Metropolis-Hastings for Large-Scale Bayesian Inference | Mar 10, 2023 | Bayesian InferenceDrug Design | CodeCode Available | 0 |
| Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation? | Mar 8, 2023 | Drug DesignDrug Discovery | —Unverified | 0 |
| 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction | Mar 6, 2023 | Drug Design | CodeCode Available | 2 |
| Accurate Free Energy Estimations of Molecular Systems Via Flow-based Targeted Free Energy Perturbation | Feb 23, 2023 | Drug Design | —Unverified | 0 |
| Machine learning for the prediction of safe and biologically active organophosphorus molecules | Feb 21, 2023 | Drug DesignDrug Discovery | —Unverified | 0 |
| ClaPIM: Scalable Sequence CLAssification using Processing-In-Memory | Feb 16, 2023 | ClassificationDrug Design | CodeCode Available | 0 |
| Do Deep Learning Models Really Outperform Traditional Approaches in Molecular Docking? | Feb 14, 2023 | Deep LearningDrug Design | —Unverified | 0 |