| Manifold-Constrained Nucleus-Level Denoising Diffusion Model for Structure-Based Drug Design | Sep 16, 2024 | DenoisingDrug Design | CodeCode Available | 1 |
| CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction | Aug 21, 2024 | Drug DesignPrediction | CodeCode Available | 1 |
| What Ails Generative Structure-based Drug Design: Expressivity is Too Little or Too Much? | Aug 12, 2024 | AttributeDrug Design | CodeCode Available | 1 |
| Small Molecule Optimization with Large Language Models | Jul 26, 2024 | Drug Design | CodeCode Available | 1 |
| Ranking protein-protein models with large language models and graph neural networks | Jul 23, 2024 | Drug Design | CodeCode Available | 1 |
| Aligning Target-Aware Molecule Diffusion Models with Exact Energy Optimization | Jul 1, 2024 | AvgDrug Design | CodeCode Available | 1 |
| General Binding Affinity Guidance for Diffusion Models in Structure-Based Drug Design | Jun 24, 2024 | BenchmarkingDrug Design | CodeCode Available | 1 |
| A survey and benchmark of high-dimensional Bayesian optimization of discrete sequences | Jun 7, 2024 | Bayesian OptimizationDrug Design | CodeCode Available | 1 |
| Modeling PROTAC Degradation Activity with Machine Learning | Jun 4, 2024 | Binary ClassificationDrug Design | CodeCode Available | 1 |
| Structure-based Drug Design Benchmark: Do 3D Methods Really Dominate? | Jun 4, 2024 | Drug Design | CodeCode Available | 1 |
| TAGMol: Target-Aware Gradient-guided Molecule Generation | Jun 3, 2024 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| FusionDTI: Fine-grained Binding Discovery with Token-level Fusion for Drug-Target Interaction | Jun 3, 2024 | Drug DesignDrug Discovery | CodeCode Available | 1 |
| BInD: Bond and Interaction-generating Diffusion Model for Multi-objective Structure-based Drug Design | May 27, 2024 | 3D Molecule GenerationDrug Design | CodeCode Available | 1 |
| Structure-based drug design by denoising voxel grids | May 7, 2024 | DenoisingDrug Design | CodeCode Available | 1 |
| Navigating Chemical Space with Latent Flows | May 7, 2024 | DiversityDrug Design | CodeCode Available | 1 |
| Protein language models are performant in structure-free virtual screening | Apr 20, 2024 | Drug DesignMolecular Docking | CodeCode Available | 1 |
| Graph Diffusion Policy Optimization | Feb 26, 2024 | Drug DesignGraph Generation | CodeCode Available | 1 |
| Endowing Protein Language Models with Structural Knowledge | Jan 26, 2024 | Drug DesignLanguage Modeling | CodeCode Available | 1 |
| Binding-Adaptive Diffusion Models for Structure-Based Drug Design | Jan 15, 2024 | AvgDrug Design | CodeCode Available | 1 |
| De novo Drug Design using Reinforcement Learning with Multiple GPT Agents | Dec 21, 2023 | DiversityDrug Design | CodeCode Available | 1 |
| DiffBindFR: An SE(3) Equivariant Network for Flexible Protein-Ligand Docking | Nov 26, 2023 | Drug DesignMolecular Docking | CodeCode Available | 1 |
| Accelerating Inference in Molecular Diffusion Models with Latent Representations of Protein Structure | Nov 22, 2023 | Drug Design | CodeCode Available | 1 |
| ProFSA: Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment | Oct 11, 2023 | Drug Design | CodeCode Available | 1 |
| TacoGFN: Target-conditioned GFlowNet for Structure-based Drug Design | Oct 5, 2023 | Active LearningDrug Design | CodeCode Available | 1 |
| Structure to Property: Chemical Element Embeddings and a Deep Learning Approach for Accurate Prediction of Chemical Properties | Sep 17, 2023 | DecoderDrug Design | CodeCode Available | 1 |