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Drug Design

Papers

Showing 150 of 440 papers

TitleStatusHype
Uni-Mol Docking V2: Towards Realistic and Accurate Binding Pose PredictionCode5
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone GenerationCode3
DiffDock: Diffusion Steps, Twists, and Turns for Molecular DockingCode3
CBGBench: Fill in the Blank of Protein-Molecule Complex Binding GraphCode3
ACEGEN: Reinforcement learning of generative chemical agents for drug discoveryCode3
Test-Time Training Scaling Laws for Chemical Exploration in Drug DesignCode3
Multi-Objective Molecule Generation using Interpretable SubstructuresCode2
Generative Flows on Synthetic Pathway for Drug DesignCode2
DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug DesignCode2
Machine-learned molecular mechanics force field for the simulation of protein-ligand systems and beyondCode2
A Survey of Generative AI for de novo Drug Design: New Frontiers in Molecule and Protein GenerationCode2
NeuralPLexer3: Accurate Biomolecular Complex Structure Prediction with Flow ModelsCode2
3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity PredictionCode2
M^3-20M: A Large-Scale Multi-Modal Molecule Dataset for AI-driven Drug Design and DiscoveryCode2
Structure-based Drug Design with Equivariant Diffusion ModelsCode2
A Systematic Survey of Chemical Pre-trained ModelsCode2
Piloting Structure-Based Drug Design via Modality-Specific Optimal ScheduleCode2
Multi-modal Molecule Structure-text Model for Text-based Retrieval and EditingCode2
SILVR: Guided Diffusion for Molecule GenerationCode2
SynFlowNet: Design of Diverse and Novel Molecules with Synthesis ConstraintsCode2
Empower Structure-Based Molecule Optimization with Gradient Guided Bayesian Flow NetworksCode2
Efficient Evolutionary Search Over Chemical Space with Large Language ModelsCode2
Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein PocketsCode2
Mamba-360: Survey of State Space Models as Transformer Alternative for Long Sequence Modelling: Methods, Applications, and ChallengesCode2
A 3D Generative Model for Structure-Based Drug DesignCode2
Hopfield Networks is All You NeedCode2
Functional-Group-Based Diffusion for Pocket-Specific Molecule Generation and ElaborationCode2
Compositional Flows for 3D Molecule and Synthesis Pathway Co-designCode2
MolCRAFT: Structure-Based Drug Design in Continuous Parameter SpaceCode2
PPFlow: Target-aware Peptide Design with Torsional Flow MatchingCode2
FusionDTI: Fine-grained Binding Discovery with Token-level Fusion for Drug-Target InteractionCode1
General Binding Affinity Guidance for Diffusion Models in Structure-Based Drug DesignCode1
3DMolFormer: A Dual-channel Framework for Structure-based Drug DiscoveryCode1
Accurate Protein Structure Prediction by Embeddings and Deep Learning RepresentationsCode1
Generating Focussed Molecule Libraries for Drug Discovery with Recurrent Neural NetworksCode1
Aligning Target-Aware Molecule Diffusion Models with Exact Energy OptimizationCode1
Accurate Pocket Identification for Binding-Site-Agnostic DockingCode1
Evening the Score: Targeting SARS-CoV-2 Protease Inhibition in Graph Generative Models for Therapeutic CandidatesCode1
Equivariant Shape-Conditioned Generation of 3D Molecules for Ligand-Based Drug DesignCode1
A Workflow for Exploring Ligand Dissociation from a Macromolecule: Efficient Random Acceleration Molecular Dynamics Simulation and Interaction Fingerprints Analysis of Ligand TrajectoriesCode1
Drug–target affinity prediction using graph neural network and contact mapsCode1
Exploiting Pretrained Biochemical Language Models for Targeted Drug DesignCode1
DiffBindFR: An SE(3) Equivariant Network for Flexible Protein-Ligand DockingCode1
Accelerating Inference in Molecular Diffusion Models with Latent Representations of Protein StructureCode1
Geometric Deep Learning for Structure-Based Drug Design: A SurveyCode1
A fully differentiable ligand pose optimization framework guided by deep learning and traditional scoring functionsCode1
DiffHopp: A Graph Diffusion Model for Novel Drug Design via Scaffold HoppingCode1
A survey and benchmark of high-dimensional Bayesian optimization of discrete sequencesCode1
Endowing Protein Language Models with Structural KnowledgeCode1
3DLinker: An E(3) Equivariant Variational Autoencoder for Molecular Linker DesignCode1
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