| Trackastra: Transformer-based cell tracking for live-cell microscopy | May 24, 2024 | Cell TrackingMultiple Object Tracking | CodeCode Available | 4 |
| U-Net: Convolutional Networks for Biomedical Image Segmentation | May 18, 2015 | Cell SegmentationCell Tracking | CodeCode Available | 3 |
| Contrastive learning of cell state dynamics in response to perturbations | Oct 15, 2024 | Cell TrackingContrastive Learning | CodeCode Available | 2 |
| VideoMolmo: Spatio-Temporal Grounding Meets Pointing | Jun 5, 2025 | Autonomous DrivingAutonomous Navigation | CodeCode Available | 2 |
| FastDOG: Fast Discrete Optimization on GPU | Nov 19, 2021 | Cell TrackingGPU | CodeCode Available | 1 |
| Semi supervised segmentation and graph-based tracking of 3D nuclei in time-lapse microscopy | Oct 26, 2020 | Cell TrackingClustering | CodeCode Available | 1 |
| Segmentation with Residual Attention U-Net and an Edge-Enhancement Approach Preserves Cell Shape Features | Jan 15, 2020 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| MPM: Joint Representation of Motion and Position Map for Cell Tracking | Feb 25, 2020 | Cell TrackingMulti-Object Tracking | CodeCode Available | 1 |
| Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps | Aug 8, 2023 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| Implicit Neural Representations for Generative Modeling of Living Cell Shapes | Jul 13, 2022 | Cell TrackingMedical Image Segmentation | CodeCode Available | 1 |
| Graph Neural Network for Cell Tracking in Microscopy Videos | Feb 9, 2022 | 3D Multi-Object TrackingCell Tracking | CodeCode Available | 1 |
| Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages | Aug 24, 2022 | Cell TrackingEvent Detection | CodeCode Available | 1 |
| FastTrack: an open-source software for tracking varying numbers of deformable objects | Nov 13, 2020 | Cell Tracking | CodeCode Available | 1 |
| Generative modeling of living cells with SO(3)-equivariant implicit neural representations | Apr 18, 2023 | Cell Tracking | CodeCode Available | 1 |
| CHOTA: A Higher Order Accuracy Metric for Cell Tracking | Aug 21, 2024 | Cell TrackingMultiple Object Tracking | CodeCode Available | 1 |
| Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation | Jul 30, 2020 | Cell DetectionCell Tracking | CodeCode Available | 1 |
| Faster Mean-shift: GPU-accelerated clustering for cosine embedding-based cell segmentation and tracking | Jul 28, 2020 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| Tracking-by-Counting: Using Network Flows on Crowd Density Maps for Tracking Multiple Targets | Jul 18, 2020 | Cell TrackingMulti-Object Tracking | —Unverified | 0 |
| A Semi-automatic Cell Tracking Process Towards Completing the 4D Atlas of C. elegans Development | Jul 27, 2022 | Cell Tracking | —Unverified | 0 |
| Bora: Biomedical Generalist Video Generation Model | Jul 12, 2024 | Cell TrackingData Augmentation | —Unverified | 0 |
| Cell as Point: One-Stage Framework for Efficient Cell Tracking | Nov 22, 2024 | Cell TrackingDiagnostic | —Unverified | 0 |
| Cell Tracking in C. elegans with Cell Position Heatmap-Based Alignment and Pairwise Detection | Mar 20, 2024 | Cell DetectionCell Tracking | —Unverified | 0 |
| Deep Temporal Sequence Classification and Mathematical Modeling for Cell Tracking in Dense 3D Microscopy Videos of Bacterial Biofilms | Jun 27, 2024 | Cell Tracking | —Unverified | 0 |
| Dynamic Cell Imaging in PET with Optimal Transport Regularization | Feb 20, 2019 | Cell TrackingImage Reconstruction | —Unverified | 0 |
| Globally Optimal Cell Tracking using Integer Programming | Jan 22, 2015 | Cell Tracking | —Unverified | 0 |
| Gravitational cell detection and tracking in fluorescence microscopy data | Dec 6, 2023 | Cell DetectionCell Tracking | —Unverified | 0 |
| Groupwise Tracking of Crowded Similar-Appearance Targets From Low-Continuity Image Sequences | Jun 1, 2016 | Cell Tracking | —Unverified | 0 |
| How To Make Your Cell Tracker Say "I dunno!" | Mar 12, 2025 | Bayesian InferenceCell Tracking | —Unverified | 0 |
| Joint Multi-frame Detection and Segmentation for Multi-cell Tracking | Jun 26, 2019 | Cell TrackingMitosis Detection | —Unverified | 0 |
| Learning Deformable 3D Graph Similarity to Track Plant Cells in Unregistered Time Lapse Images | Sep 20, 2023 | Cell TrackingGraph Similarity | —Unverified | 0 |
| Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis | Dec 22, 2020 | Cell TrackingMulti-Object Tracking | —Unverified | 0 |
| MigraR: an open-source, R-based application for analysis and quantification of cell migration parameters | Mar 12, 2023 | Cell Tracking | —Unverified | 0 |
| Negative Pseudo Labeling using Class Proportion for Semantic Segmentation in Pathology | Jul 16, 2020 | Cell DetectionCell Tracking | —Unverified | 0 |
| On Improving an Already Competitive Segmentation Algorithm for the Cell Tracking Challenge - Lessons Learned | Jun 28, 2021 | Cell TrackingData Augmentation | —Unverified | 0 |
| Phase Contrast Microscopy Cell PopulationSegmentation: A Survey | Nov 25, 2019 | Cell TrackingSurvey | —Unverified | 0 |
| Reconstructing the Forest of Lineage Trees of Diverse Bacterial Communities Using Bio-inspired Image Analysis | Jun 22, 2017 | Cell SegmentationCell Tracking | —Unverified | 0 |
| Segmentation based tracking of cells in 2D+time microscopy images of macrophages | Jan 2, 2023 | Cell TrackingSegmentation | —Unverified | 0 |
| Siamese Tracking of Cell Behaviour Patterns | Jan 25, 2020 | Cell TrackingSegmentation | —Unverified | 0 |
| SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter | Aug 26, 2015 | Cell Tracking | —Unverified | 0 |
| Structured Learning for Cell Tracking | Dec 1, 2011 | Cell TrackingCultural Vocal Bursts Intensity Prediction | —Unverified | 0 |
| SynCellFactory: Generative Data Augmentation for Cell Tracking | Apr 25, 2024 | Cell TrackingData Augmentation | —Unverified | 0 |
| Tracking-Assisted Segmentation of Biological Cells | Oct 19, 2019 | Cell TrackingSegmentation | —Unverified | 0 |
| Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics | Nov 1, 2024 | Cell Tracking | —Unverified | 0 |
| Tracking Single-Cells in Overcrowded Bacterial Colonies | Jun 22, 2017 | Cell TrackingMotion Estimation | —Unverified | 0 |
| VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning | Jun 22, 2021 | 3D Instance SegmentationCell Tracking | —Unverified | 0 |
| Towards an Automatic Analysis of CHO-K1 Suspension Growth in Microfluidic Single-cell Cultivation | Oct 20, 2020 | Cell TrackingTime Series Analysis | CodeCode Available | 0 |
| A Deep Learning Bidirectional Temporal Tracking Algorithm for Automated Blood Cell Counting from Non-invasive Capillaroscopy Videos | Nov 26, 2020 | Cell TrackingMultiple Object Tracking | CodeCode Available | 0 |
| Appearance-free Tripartite Matching for Multiple Object Tracking | Aug 9, 2020 | Cell TrackingMultiple Object Tracking | CodeCode Available | 0 |
| Prediction of Cellular Identities from Trajectory and Cell Fate Information | Jan 11, 2024 | Cell Tracking | CodeCode Available | 0 |
| PyUAT: Open-source Python framework for efficient and scalable cell tracking | Mar 27, 2025 | Cell Trackingcounterfactual | CodeCode Available | 0 |