| Trackastra: Transformer-based cell tracking for live-cell microscopy | May 24, 2024 | Cell TrackingMultiple Object Tracking | CodeCode Available | 4 |
| U-Net: Convolutional Networks for Biomedical Image Segmentation | May 18, 2015 | Cell SegmentationCell Tracking | CodeCode Available | 3 |
| Contrastive learning of cell state dynamics in response to perturbations | Oct 15, 2024 | Cell TrackingContrastive Learning | CodeCode Available | 2 |
| VideoMolmo: Spatio-Temporal Grounding Meets Pointing | Jun 5, 2025 | Autonomous DrivingAutonomous Navigation | CodeCode Available | 2 |
| MPM: Joint Representation of Motion and Position Map for Cell Tracking | Feb 25, 2020 | Cell TrackingMulti-Object Tracking | CodeCode Available | 1 |
| CHOTA: A Higher Order Accuracy Metric for Cell Tracking | Aug 21, 2024 | Cell TrackingMultiple Object Tracking | CodeCode Available | 1 |
| Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation | Jul 30, 2020 | Cell DetectionCell Tracking | CodeCode Available | 1 |
| Segmentation with Residual Attention U-Net and an Edge-Enhancement Approach Preserves Cell Shape Features | Jan 15, 2020 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages | Aug 24, 2022 | Cell TrackingEvent Detection | CodeCode Available | 1 |
| Graph Neural Network for Cell Tracking in Microscopy Videos | Feb 9, 2022 | 3D Multi-Object TrackingCell Tracking | CodeCode Available | 1 |
| Generative modeling of living cells with SO(3)-equivariant implicit neural representations | Apr 18, 2023 | Cell Tracking | CodeCode Available | 1 |
| Implicit Neural Representations for Generative Modeling of Living Cell Shapes | Jul 13, 2022 | Cell TrackingMedical Image Segmentation | CodeCode Available | 1 |
| Semi supervised segmentation and graph-based tracking of 3D nuclei in time-lapse microscopy | Oct 26, 2020 | Cell TrackingClustering | CodeCode Available | 1 |
| Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps | Aug 8, 2023 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| Faster Mean-shift: GPU-accelerated clustering for cosine embedding-based cell segmentation and tracking | Jul 28, 2020 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| FastDOG: Fast Discrete Optimization on GPU | Nov 19, 2021 | Cell TrackingGPU | CodeCode Available | 1 |
| FastTrack: an open-source software for tracking varying numbers of deformable objects | Nov 13, 2020 | Cell Tracking | CodeCode Available | 1 |
| Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis | Dec 22, 2020 | Cell TrackingMulti-Object Tracking | —Unverified | 0 |
| Learning Deformable 3D Graph Similarity to Track Plant Cells in Unregistered Time Lapse Images | Sep 20, 2023 | Cell TrackingGraph Similarity | —Unverified | 0 |
| MigraR: an open-source, R-based application for analysis and quantification of cell migration parameters | Mar 12, 2023 | Cell Tracking | —Unverified | 0 |
| Joint Multi-frame Detection and Segmentation for Multi-cell Tracking | Jun 26, 2019 | Cell TrackingMitosis Detection | —Unverified | 0 |
| How To Make Your Cell Tracker Say "I dunno!" | Mar 12, 2025 | Bayesian InferenceCell Tracking | —Unverified | 0 |
| A Semi-automatic Cell Tracking Process Towards Completing the 4D Atlas of C. elegans Development | Jul 27, 2022 | Cell Tracking | —Unverified | 0 |
| Globally Optimal Cell Tracking using Integer Programming | Jan 22, 2015 | Cell Tracking | —Unverified | 0 |
| Dynamic Cell Imaging in PET with Optimal Transport Regularization | Feb 20, 2019 | Cell TrackingImage Reconstruction | —Unverified | 0 |
