| Trackastra: Transformer-based cell tracking for live-cell microscopy | May 24, 2024 | Cell TrackingMultiple Object Tracking | CodeCode Available | 4 |
| U-Net: Convolutional Networks for Biomedical Image Segmentation | May 18, 2015 | Cell SegmentationCell Tracking | CodeCode Available | 3 |
| VideoMolmo: Spatio-Temporal Grounding Meets Pointing | Jun 5, 2025 | Autonomous DrivingAutonomous Navigation | CodeCode Available | 2 |
| Contrastive learning of cell state dynamics in response to perturbations | Oct 15, 2024 | Cell TrackingContrastive Learning | CodeCode Available | 2 |
| CHOTA: A Higher Order Accuracy Metric for Cell Tracking | Aug 21, 2024 | Cell TrackingMultiple Object Tracking | CodeCode Available | 1 |
| Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps | Aug 8, 2023 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| Generative modeling of living cells with SO(3)-equivariant implicit neural representations | Apr 18, 2023 | Cell Tracking | CodeCode Available | 1 |
| Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages | Aug 24, 2022 | Cell TrackingEvent Detection | CodeCode Available | 1 |
| Implicit Neural Representations for Generative Modeling of Living Cell Shapes | Jul 13, 2022 | Cell TrackingMedical Image Segmentation | CodeCode Available | 1 |
| Graph Neural Network for Cell Tracking in Microscopy Videos | Feb 9, 2022 | 3D Multi-Object TrackingCell Tracking | CodeCode Available | 1 |
| FastDOG: Fast Discrete Optimization on GPU | Nov 19, 2021 | Cell TrackingGPU | CodeCode Available | 1 |
| FastTrack: an open-source software for tracking varying numbers of deformable objects | Nov 13, 2020 | Cell Tracking | CodeCode Available | 1 |
| Semi supervised segmentation and graph-based tracking of 3D nuclei in time-lapse microscopy | Oct 26, 2020 | Cell TrackingClustering | CodeCode Available | 1 |
| Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation | Jul 30, 2020 | Cell DetectionCell Tracking | CodeCode Available | 1 |
| Faster Mean-shift: GPU-accelerated clustering for cosine embedding-based cell segmentation and tracking | Jul 28, 2020 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| MPM: Joint Representation of Motion and Position Map for Cell Tracking | Feb 25, 2020 | Cell TrackingMulti-Object Tracking | CodeCode Available | 1 |
| Segmentation with Residual Attention U-Net and an Edge-Enhancement Approach Preserves Cell Shape Features | Jan 15, 2020 | Cell SegmentationCell Tracking | CodeCode Available | 1 |
| Accurate Tracking of Arabidopsis Root Cortex Cell Nuclei in 3D Time-Lapse Microscopy Images Based on Genetic Algorithm | Apr 17, 2025 | Cell Tracking | CodeCode Available | 0 |
| PyUAT: Open-source Python framework for efficient and scalable cell tracking | Mar 27, 2025 | Cell Trackingcounterfactual | CodeCode Available | 0 |
| How To Make Your Cell Tracker Say "I dunno!" | Mar 12, 2025 | Bayesian InferenceCell Tracking | —Unverified | 0 |
| Cell as Point: One-Stage Framework for Efficient Cell Tracking | Nov 22, 2024 | Cell TrackingDiagnostic | —Unverified | 0 |
| SINETRA: a Versatile Framework for Evaluating Single Neuron Tracking in Behaving Animals | Nov 14, 2024 | Cell Tracking | CodeCode Available | 0 |
| Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustness metrics | Nov 1, 2024 | Cell Tracking | —Unverified | 0 |
| Robust Approximate Characterization of Single-Cell Heterogeneity in Microbial Growth | Aug 8, 2024 | Cell TrackingInstance Segmentation | CodeCode Available | 0 |
| Bora: Biomedical Generalist Video Generation Model | Jul 12, 2024 | Cell TrackingData Augmentation | —Unverified | 0 |
