Synthesizing Proton-Density Fat Fraction and R_2^* from 2-point Dixon MRI with Generative Machine Learning

Abstract

Magnetic Resonance Imaging (MRI) is the gold standard for measuring fat and iron content non-invasively in the body via measures known as Proton Density Fat Fraction (PDFF) and R_2^*, respectively. However, conventional PDFF and R_2^* quantification methods operate on MR images voxel-wise and require at least three measurements to estimate three quantities: water, fat, and R_2^*. Alternatively, the two-point Dixon MRI protocol is widely used and fast because it acquires only two measurements; however, these cannot be used to estimate three quantities voxel-wise. Leveraging the fact that neighboring voxels have similar values, we propose using a generative machine learning approach to learn PDFF and R_2^* from Dixon MRI. We use paired Dixon-IDEAL data from UK Biobank in the liver and a Pix2Pix conditional GAN to demonstrate the first large-scale R_2^* imputation from two-point Dixon MRIs. Using our proposed approach, we synthesize PDFF and R_2^* maps that show significantly greater correlation with ground-truth than conventional voxel-wise baselines.

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Reproductions