Subject-Aware Contrastive Learning for Biosignals

Code

• github.com/zacharycbrown/ssl_baselines_for_biosignal_feature_extraction
  pytorch★ 53

Abstract

Datasets for biosignals, such as electroencephalogram (EEG) and electrocardiogram (ECG), often have noisy labels and have limited number of subjects (<100). To handle these challenges, we propose a self-supervised approach based on contrastive learning to model biosignals with a reduced reliance on labeled data and with fewer subjects. In this regime of limited labels and subjects, intersubject variability negatively impacts model performance. Thus, we introduce subject-aware learning through (1) a subject-specific contrastive loss, and (2) an adversarial training to promote subject-invariance during the self-supervised learning. We also develop a number of time-series data augmentation techniques to be used with the contrastive loss for biosignals. Our method is evaluated on publicly available datasets of two different biosignals with different tasks: EEG decoding and ECG anomaly detection. The embeddings learned using self-supervision yield competitive classification results compared to entirely supervised methods. We show that subject-invariance improves representation quality for these tasks, and observe that subject-specific loss increases performance when fine-tuning with supervised labels.

Tasks

Benchmark Results

Reproductions