PaGraph: Scaling GNN Training on Large Graphs via Computation-aware Caching and Partitioning

Abstract

Emerging graph neural networks (GNNs) have extended the successes of deep learning techniques against datasets like images and texts to more complex graph-structured data. By leveraging GPU accelerators, existing frameworks combine both mini-batch and sampling for effective and efficient model training on large graphs. However, this setup faces a scalability issue since loading rich vertices features from CPU to GPU through a limited bandwidth link usually dominates the training cycle. In this paper, we propose PaGraph, a system that supports general and efficient sampling-based GNN training on single-server with multi-GPU. PaGraph significantly reduces the data loading time by exploiting available GPU resources to keep frequently accessed graph data with a cache. It also embodies a lightweight yet effective caching policy that takes into account graph structural information and data access patterns of sampling-based GNN training simultaneously. Furthermore, to scale out on multiple GPUs, PaGraph develops a fast GNN-computation-aware partition algorithm to avoid cross-partition access during data parallel training and achieves better cache efficiency. Evaluations on two representative GNN models, GCN and GraphSAGE, show that PaGraph achieves up to 96.8% data loading time reductions and up to 4.8X performance speedup over the state-of-the-art baselines. Together with preprocessing optimization, PaGraph further delivers up to 16.0X end-to-end speedup.

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Reproductions