Optum at MEDIQA 2021: Abstractive Summarization of Radiology Reports using simple BART Finetuning

Abstract

This paper describes experiments undertaken and their results as part of the BioNLP MEDIQA 2021 challenge. We participated in Task 3: Radiology Report Summarization. Multiple runs were submitted for evaluation, from solutions leveraging transfer learning from pre-trained transformer models, which were then fine tuned on a subset of MIMIC-CXR, for abstractive report summarization. The task was evaluated using ROUGE and our best performing system obtained a ROUGE-2 score of 0.392.

Tasks

Reproductions