Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations

Code

• github.com/bio-ontology-research-group/onto2vec
  OfficialIn papernone★ 0

Abstract

We propose the Onto2Vec method, an approach to learn feature vectors for biological entities based on their annotations to biomedical ontologies. Our method can be applied to a wide range of bioinformatics research problems such as similarity-based prediction of interactions between proteins, classification of interaction types using supervised learning, or clustering.

Tasks

Reproductions