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Logical Expressiveness of Graph Neural Networks with Hierarchical Node Individualization

2025-06-16Code Available0· sign in to hype

Arie Soeteman, Balder ten Cate

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Abstract

We propose and study Hierarchical Ego Graph Neural Networks (HEGNNs), an expressive extension of graph neural networks (GNNs) with hierarchical node individualization, inspired by the Individualization-Refinement paradigm for graph isomorphism testing. HEGNNs generalize subgraph-GNNs and form a hierarchy of increasingly expressive models that, in the limit, can distinguish graphs up to isomorphism. We provide a logical characterization of HEGNN node classifiers, with and without subgraph restrictions, using graded hybrid logic. This characterization enables us to relate the separating power of HEGNNs to that of higher-order GNNs, GNNs enriched with local homomorphism count features, and color refinement algorithms based on Individualization-Refinement. Our experimental results confirm the practical feasibility of HEGNNs and show benefits in comparison with traditional GNN architectures, both with and without local homomorphism count features.

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