Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python
Hannah Eyre, Alec B Chapman, Kelly S Peterson, Jianlin Shi, Patrick R Alba, Makoto M Jones, Tamara L Box, Scott L DuVall, Olga V Patterson
Code Available — Be the first to reproduce this paper.
ReproduceCode
- github.com/medspacy/medspacyOfficialnone★ 640
Abstract
Despite impressive success of machine learning algorithms in clinical natural language processing (cNLP), rule-based approaches still have a prominent role. In this paper, we introduce medspaCy, an extensible, open-source cNLP library based on spaCy framework that allows flexible integration of rule-based and machine learning-based algorithms adapted to clinical text. MedspaCy includes a variety of components that meet common cNLP needs such as context analysis and mapping to standard terminologies. By utilizing spaCy's clear and easy-to-use conventions, medspaCy enables development of custom pipelines that integrate easily with other spaCy-based modules. Our toolkit includes several core components and facilitates rapid development of pipelines for clinical text.