k-Means Clustering for Persistent Homology

Code

• github.com/pruskileung/ph-kmeans
  OfficialIn papernone★ 7

Abstract

Persistent homology is a methodology central to topological data analysis that extracts and summarizes the topological features within a dataset as a persistence diagram; it has recently gained much popularity from its myriad successful applications to many domains. However, its algebraic construction induces a metric space of persistence diagrams with a highly complex geometry. In this paper, we prove convergence of the k-means clustering algorithm on persistence diagram space and establish theoretical properties of the solution to the optimization problem in the Karush--Kuhn--Tucker framework. Additionally, we perform numerical experiments on various representations of persistent homology, including embeddings of persistence diagrams as well as diagrams themselves and their generalizations as persistence measures; we find that k-means clustering performance directly on persistence diagrams and measures outperform their vectorized representations.

Tasks

Reproductions